Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAMTA208_RS13235 Genome accession   NC_017188
Coordinates   2619970..2620722 (-) Length   250 a.a.
NCBI ID   WP_013353066.1    Uniprot ID   A0A9P1JIQ0
Organism   Bacillus amyloliquefaciens TA208     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2614970..2625722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS13210 (BAMTA208_13745) mreC 2615405..2616268 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  BAMTA208_RS13215 (BAMTA208_13750) mreB 2616299..2617312 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  BAMTA208_RS13220 (BAMTA208_13755) radC 2617404..2618099 (-) 696 WP_013353063.1 RadC family protein -
  BAMTA208_RS13225 (BAMTA208_13760) - 2618131..2618700 (-) 570 WP_013353064.1 Maf family protein -
  BAMTA208_RS13230 (BAMTA208_13765) - 2618842..2619843 (-) 1002 WP_013353065.1 SPOR domain-containing protein -
  BAMTA208_RS13235 (BAMTA208_13770) comC 2619970..2620722 (-) 753 WP_013353066.1 prepilin peptidase Machinery gene
  BAMTA208_RS13240 (BAMTA208_13775) - 2620862..2622154 (-) 1293 WP_013353067.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BAMTA208_RS13245 (BAMTA208_13780) - 2622213..2624855 (-) 2643 WP_013353068.1 valine--tRNA ligase -
  BAMTA208_RS13250 (BAMTA208_13785) - 2625306..2625497 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26869.51 Da        Isoelectric Point: 9.0703

>NTDB_id=45195 BAMTA208_RS13235 WP_013353066.1 2619970..2620722(-) (comC) [Bacillus amyloliquefaciens TA208]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHFGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=45195 BAMTA208_RS13235 WP_013353066.1 2619970..2620722(-) (comC) [Bacillus amyloliquefaciens TA208]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGGAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCCTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGGAGATGCAGAAACTGCCGTGGGAAGCTGTCGATTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAAGAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTATTTTTATT
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTCATCGGCCTTGCGCTCGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCCGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592

Multiple sequence alignment