Detailed information NTG0451223

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STMM8_RS09200
• Genome accession: NZ_CP065787
• Coordinates: 1758274..1759374 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain MM8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1753274..1764374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STMM8_RS09175 (STMM8_09155)	pgsA	1753816..1754358 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STMM8_RS09180 (STMM8_09160)	-	1754371..1755228 (-)	858	WP_002947779.1	helix-turn-helix transcriptional regulator	-
STMM8_RS09185 (STMM8_09165)	yfmH	1755287..1756564 (-)	1278	WP_141326658.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
STMM8_RS09190 (STMM8_09170)	yfmF	1756566..1757816 (-)	1251	WP_002947784.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
STMM8_RS09195 (STMM8_09175)	yaaA	1757894..1758271 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
STMM8_RS09200 (STMM8_09180)	recF	1758274..1759374 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
STMM8_RS09205 (STMM8_09185)	guaB	1759543..1761024 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
STMM8_RS09210 (STMM8_09190)	trpS	1761201..1762223 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
STMM8_RS09215 (STMM8_09195)	-	1762651..1763523 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=451223 STMM8_RS09200 WP_002947786.1 1758274..1759374(+) (recF) [Streptococcus thermophilus strain MM8]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=451223 STMM8_RS09200 WP_002947786.1 1758274..1759374(+) (recF) [Streptococcus thermophilus strain MM8]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAGGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432