Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   C695_RS06120 Genome accession   NC_018937
Coordinates   1262052..1263101 (+) Length   349 a.a.
NCBI ID   WP_000115493.1    Uniprot ID   O25802
Organism   Helicobacter pylori Rif1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257052..1268101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C695_RS06105 (C695_06155) - 1258182..1259221 (-) 1040 Protein_1150 DUF874 family protein -
  C695_RS06110 (C695_06160) asd 1259635..1260675 (-) 1041 WP_000860874.1 aspartate-semialdehyde dehydrogenase -
  C695_RS06115 (C695_06165) hisS 1260662..1261990 (-) 1329 WP_000632518.1 histidine--tRNA ligase -
  C695_RS06120 (C695_06170) waaF 1262052..1263101 (+) 1050 WP_000115493.1 lipopolysaccharide heptosyltransferase II Regulator
  C695_RS06125 (C695_06175) - 1263292..1263573 (-) 282 WP_000744184.1 hypothetical protein -
  C695_RS06130 (C695_06180) - 1263791..1264780 (+) 990 WP_001187417.1 aldo/keto reductase -
  C695_RS06135 (C695_06185) fusA 1265323..1267401 (-) 2079 WP_000101814.1 elongation factor G -
  C695_RS06140 (C695_06190) rpsG 1267413..1267880 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39447.18 Da        Isoelectric Point: 9.4790

>NTDB_id=45089 C695_RS06120 WP_000115493.1 1262052..1263101(+) (waaF) [Helicobacter pylori Rif1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFIDNTKKSFFRLLAIHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGSLKNPSLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASMQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNAKNHLCMKSITPLEVLEAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=45089 C695_RS06120 WP_000115493.1 1262052..1263101(+) (waaF) [Helicobacter pylori Rif1]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGTTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCATTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTCATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCATGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGCAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(77-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25802

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.5

98.567

0.37

Multiple sequence alignment