Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ST4147_RS01375 Genome accession   NZ_CP065504
Coordinates   246885..247481 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain 4147     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 241885..252481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4147_RS01360 (ST4147_01345) - 242533..242973 (+) 441 WP_059257364.1 DUF805 domain-containing protein -
  ST4147_RS01365 (ST4147_01350) pepC 243075..244412 (+) 1338 WP_011225417.1 aminopeptidase C -
  ST4147_RS01370 (ST4147_01355) pbp1a 244522..246885 (-) 2364 WP_059257363.1 penicillin-binding protein PBP1A -
  ST4147_RS01375 (ST4147_01360) recU 246885..247481 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  ST4147_RS01380 (ST4147_01365) - 247558..248073 (+) 516 WP_011225419.1 DUF1273 domain-containing protein -
  ST4147_RS01385 (ST4147_01370) gpsB 248182..248514 (+) 333 WP_011225420.1 cell division regulator GpsB -
  ST4147_RS01395 (ST4147_01380) - 249047..250213 (+) 1167 WP_041826961.1 class I SAM-dependent RNA methyltransferase -
  ST4147_RS01400 (ST4147_01385) - 250216..252078 (+) 1863 WP_011225422.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=449637 ST4147_RS01375 WP_002949408.1 246885..247481(-) (recU) [Streptococcus thermophilus strain 4147]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=449637 ST4147_RS01375 WP_002949408.1 246885..247481(-) (recU) [Streptococcus thermophilus strain 4147]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51