Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC90_RS23950 Genome accession   NZ_CP053972
Coordinates   3932021..3932623 (-) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus thuringiensis strain FDAARGOS_796     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3927021..3937623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC90_RS23930 (FOC90_23940) dnaD 3927334..3928041 (+) 708 WP_000728537.1 DNA replication protein DnaD -
  FOC90_RS23935 (FOC90_23945) nth 3928057..3928704 (+) 648 WP_000933035.1 endonuclease III -
  FOC90_RS23940 (FOC90_23950) - 3928708..3929226 (+) 519 WP_000442662.1 YpoC family protein -
  FOC90_RS23945 (FOC90_23955) - 3929253..3931955 (-) 2703 WP_001283103.1 PBP1A family penicillin-binding protein -
  FOC90_RS23950 (FOC90_23960) recU 3932021..3932623 (-) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  FOC90_RS23955 (FOC90_23965) - 3932727..3933752 (+) 1026 WP_003277507.1 DUF2515 domain-containing protein -
  FOC90_RS32890 - 3933904..3934083 (-) 180 WP_003277508.1 hypothetical protein -
  FOC90_RS23960 (FOC90_23970) - 3934169..3934411 (+) 243 WP_001252036.1 hypothetical protein -
  FOC90_RS23965 (FOC90_23975) - 3934427..3934771 (+) 345 WP_000786936.1 YppE family protein -
  FOC90_RS23970 (FOC90_23980) - 3934798..3934989 (-) 192 WP_000242652.1 YppF family protein -
  FOC90_RS23975 (FOC90_23985) - 3935167..3935772 (+) 606 WP_000487717.1 YppG family protein -
  FOC90_RS23980 (FOC90_23990) - 3935928..3936350 (+) 423 WP_000546292.1 CotD family spore coat protein -
  FOC90_RS23985 (FOC90_23995) - 3936407..3936961 (+) 555 WP_000862927.1 DUF1273 domain-containing protein -
  FOC90_RS23990 (FOC90_24000) gpsB 3937059..3937394 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=449591 FOC90_RS23950 WP_000155599.1 3932021..3932623(-) (recU) [Bacillus thuringiensis strain FDAARGOS_796]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=449591 FOC90_RS23950 WP_000155599.1 3932021..3932623(-) (recU) [Bacillus thuringiensis strain FDAARGOS_796]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGCAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635