Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STAVA116_RS06315 Genome accession   NZ_CP065498
Coordinates   1227256..1228749 (-) Length   497 a.a.
NCBI ID   WP_002946410.1    Uniprot ID   Q5M3H4
Organism   Streptococcus thermophilus strain AVA116     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222256..1233749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS06285 (STAVA116_06255) - 1222386..1222763 (+) 378 WP_087010062.1 GntR family transcriptional regulator -
  STAVA116_RS06290 (STAVA116_06260) - 1222768..1223466 (+) 699 WP_087010063.1 ABC transporter ATP-binding protein -
  STAVA116_RS06295 (STAVA116_06265) - 1223478..1224263 (+) 786 WP_002951425.1 hypothetical protein -
  STAVA116_RS06300 (STAVA116_06270) - 1224313..1225242 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  STAVA116_RS06305 (STAVA116_06275) amiE 1225235..1226320 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STAVA116_RS06310 (STAVA116_06280) amiD 1226330..1227256 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STAVA116_RS06315 (STAVA116_06285) amiC 1227256..1228749 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  STAVA116_RS06320 (STAVA116_06290) amiA 1228811..1230778 (-) 1968 WP_087010065.1 peptide ABC transporter substrate-binding protein Regulator
  STAVA116_RS06325 (STAVA116_06295) - 1231164..1232365 (+) 1202 Protein_1203 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55751.62 Da        Isoelectric Point: 10.0618

>NTDB_id=449370 STAVA116_RS06315 WP_002946410.1 1227256..1228749(-) (amiC) [Streptococcus thermophilus strain AVA116]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=449370 STAVA116_RS06315 WP_002946410.1 1227256..1228749(-) (amiC) [Streptococcus thermophilus strain AVA116]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATTTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

100

100

1
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

97.384

100

0.974