Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ST4067_RS01295 Genome accession   NZ_CP065496
Coordinates   234691..235287 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain 4067     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 229691..240287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS01280 (ST4067_01280) - 230405..230845 (+) 441 WP_011225416.1 DUF805 domain-containing protein -
  ST4067_RS01285 (ST4067_01285) pepC 230947..232284 (+) 1338 WP_014607929.1 aminopeptidase C -
  ST4067_RS01290 (ST4067_01290) pbp1a 232394..234691 (-) 2298 WP_180483464.1 penicillin-binding protein PBP1A -
  ST4067_RS01295 (ST4067_01295) recU 234691..235287 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  ST4067_RS01300 (ST4067_01300) - 235364..235879 (+) 516 WP_002949411.1 DUF1273 domain-containing protein -
  ST4067_RS01305 (ST4067_01305) gpsB 235988..236320 (+) 333 WP_014607932.1 cell division regulator GpsB -
  ST4067_RS01315 (ST4067_01315) - 236853..238019 (+) 1167 WP_116920382.1 class I SAM-dependent RNA methyltransferase -
  ST4067_RS01320 (ST4067_01320) - 238022..239884 (+) 1863 WP_116920095.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=449220 ST4067_RS01295 WP_002949408.1 234691..235287(-) (recU) [Streptococcus thermophilus strain 4067]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=449220 ST4067_RS01295 WP_002949408.1 234691..235287(-) (recU) [Streptococcus thermophilus strain 4067]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAAATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51