Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ST4145_RS01255 Genome accession   NZ_CP065492
Coordinates   228469..229065 (-) Length   198 a.a.
NCBI ID   WP_024009722.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4145     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 223469..234065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4145_RS01240 (ST4145_01230) - 224150..224590 (+) 441 WP_011680699.1 DUF805 domain-containing protein -
  ST4145_RS01245 (ST4145_01235) pepC 224692..226029 (+) 1338 WP_014607929.1 aminopeptidase C -
  ST4145_RS01250 (ST4145_01240) pbp1a 226139..228469 (-) 2331 WP_024009721.1 penicillin-binding protein PBP1A -
  ST4145_RS01255 (ST4145_01245) recU 228469..229065 (-) 597 WP_024009722.1 Holliday junction resolvase RecU Machinery gene
  ST4145_RS01260 (ST4145_01250) - 229142..229657 (+) 516 WP_024009723.1 DUF1273 domain-containing protein -
  ST4145_RS01265 (ST4145_01255) gpsB 229766..230098 (+) 333 WP_011680702.1 cell division regulator GpsB -
  ST4145_RS01275 (ST4145_01265) - 230632..231798 (+) 1167 WP_082245768.1 class I SAM-dependent RNA methyltransferase -
  ST4145_RS01280 (ST4145_01270) - 231801..233663 (+) 1863 WP_024009725.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22783.32 Da        Isoelectric Point: 10.1109

>NTDB_id=448905 ST4145_RS01255 WP_024009722.1 228469..229065(-) (recU) [Streptococcus thermophilus strain 4145]
MVNYPHQISRKIAQVSTKKSNRVDFANRGMNFESAINATNNYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHPHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=448905 ST4145_RS01255 WP_024009722.1 228469..229065(-) (recU) [Streptococcus thermophilus strain 4145]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTAAGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATCAATGCGACTAATAATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCTGTTCAGATCGTCAAAGTCGATTATCCAAAACGTTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATCCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTTCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAGTCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505