Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   STCNRZ302_RS01325 Genome accession   NZ_CP065489
Coordinates   239011..239607 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain CNRZ302     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234011..244607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ302_RS01315 (STCNRZ302_01300) - 235370..236626 (+) 1257 WP_011681055.1 ISL3-like element ISSth1 family transposase -
  STCNRZ302_RS01320 (STCNRZ302_01305) pbp1a 236702..239011 (-) 2310 WP_179970768.1 penicillin-binding protein PBP1A -
  STCNRZ302_RS01325 (STCNRZ302_01310) recU 239011..239607 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  STCNRZ302_RS01330 (STCNRZ302_01315) - 239684..240199 (+) 516 WP_002949411.1 DUF1273 domain-containing protein -
  STCNRZ302_RS01335 (STCNRZ302_01320) gpsB 240308..240640 (+) 333 WP_084830490.1 cell division regulator GpsB -
  STCNRZ302_RS01345 (STCNRZ302_01330) - 241173..242339 (+) 1167 WP_179970767.1 class I SAM-dependent RNA methyltransferase -
  STCNRZ302_RS01350 (STCNRZ302_01335) - 242342..244204 (+) 1863 WP_084829323.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=448600 STCNRZ302_RS01325 WP_002949408.1 239011..239607(-) (recU) [Streptococcus thermophilus strain CNRZ302]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=448600 STCNRZ302_RS01325 WP_002949408.1 239011..239607(-) (recU) [Streptococcus thermophilus strain CNRZ302]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGTGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51