Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STR1_RS01880 Genome accession   NZ_CP065486
Coordinates   354923..355585 (+) Length   220 a.a.
NCBI ID   WP_095559241.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349923..360585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS01855 (STR1_01855) - 350241..350951 (+) 711 WP_011680767.1 ABC transporter ATP-binding protein -
  STR1_RS01860 (STR1_01860) - 351087..351747 (+) 661 Protein_327 CBS and ACT domain-containing protein -
  STR1_RS01865 (STR1_01865) cysK 351914..352840 (-) 927 WP_011680768.1 cysteine synthase A -
  STR1_RS01870 (STR1_01870) - 352942..353568 (-) 627 WP_011680769.1 YigZ family protein -
  STR1_RS01875 (STR1_01875) comFA/cflA 353623..354942 (+) 1320 WP_011680770.1 DEAD/DEAH box helicase Machinery gene
  STR1_RS01880 (STR1_01880) comFC/cflB 354923..355585 (+) 663 WP_095559241.1 ComF family protein Machinery gene
  STR1_RS01885 (STR1_01885) raiA 355664..356212 (+) 549 WP_095559242.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26036.40 Da        Isoelectric Point: 9.1304

>NTDB_id=448292 STR1_RS01880 WP_095559241.1 354923..355585(+) (comFC/cflB) [Streptococcus thermophilus strain R1]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=448292 STR1_RS01880 WP_095559241.1 354923..355585(+) (comFC/cflB) [Streptococcus thermophilus strain R1]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441