Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ALANTH_RS03925 Genome accession   NZ_CP053839
Coordinates   773220..775061 (-) Length   613 a.a.
NCBI ID   WP_026807555.1    Uniprot ID   A0A2K9Y5D0
Organism   Aliarcobacter lanthieri strain LMG 28516     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 768220..780061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALANTH_RS03910 (ALANTH_0781) - 768673..769800 (+) 1128 WP_026807552.1 iron-containing alcohol dehydrogenase -
  ALANTH_RS03915 (ALANTH_0782) - 769819..772104 (-) 2286 WP_026807553.1 methyl-accepting chemotaxis protein -
  ALANTH_RS03920 (ALANTH_0783) - 772195..773217 (-) 1023 WP_026807554.1 alanine racemase -
  ALANTH_RS03925 (ALANTH_0784) uvrC 773220..775061 (-) 1842 WP_026807555.1 excinuclease ABC subunit UvrC Machinery gene
  ALANTH_RS03930 (ALANTH_0785) - 775169..777592 (+) 2424 WP_172658491.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71928.29 Da        Isoelectric Point: 9.0943

>NTDB_id=448056 ALANTH_RS03925 WP_026807555.1 773220..775061(-) (uvrC) [Aliarcobacter lanthieri strain LMG 28516]
MILEEKLKELPNDAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMICEVKNLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNDDFPRLEITRKIQKGKNIKYFGPYSSGARDMLDSIYEIVPLVQKKAC
IKGKKACLFHQIAKCLAPCENKISKEDYSKIVENALEYIYNKTKLISKLKEKMKIYSNDFRFEDAMNLRDRIKTIEKSQI
KTGIDLATNEDIDIFAINSNNKKAVIVRMFLRDGKLTSSNYDFIKINDDLEFDYEEAYKRAIINYYDNELPLLPKEVLIA
HELLELDDIEEFLYTKFNKKIKIVNPKKDKKREIINIALNNCNELLRLEEAKNQTTIYEELKELFNLKTLPYIIESFDNS
HLMGQATVGAMIVWNEELNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQSVG
VNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKNSSGEFKNFNLLTSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQISL
LQIKGIGEAKIKKLLLYFGEFEKIKNASFEELKSVLNEKDANTILDYFNDFKD

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=448056 ALANTH_RS03925 WP_026807555.1 773220..775061(-) (uvrC) [Aliarcobacter lanthieri strain LMG 28516]
ATGATTTTAGAAGAGAAATTAAAAGAGTTACCAAATGATGCTGGAGTTTATCAATACTTTGATAAAGAAGGACATCTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTTAAATCTTACTTTAAATTTACTCCAAAACTATTACCAGCTGATA
AACTAAGCCCTCGTATTTATAAAATGATTTGTGAAGTTAAAAATTTAGAATGGATAGTTGTACCAAATGAACATGATGCA
CTTATATTAGAAAATTCTTTAATAAAACAATTAAAACCAAAATACAATATCTTACTTCGTGATGATAAAACATATCCATA
TATTTTTATAGATTATAATGATGATTTTCCAAGGTTAGAAATAACAAGAAAAATACAAAAAGGGAAAAATATAAAATATT
TCGGTCCTTATTCAAGTGGAGCAAGAGATATGCTAGATAGTATCTATGAAATAGTTCCATTAGTTCAAAAAAAAGCTTGT
ATTAAAGGTAAAAAAGCCTGTTTATTTCACCAAATAGCAAAATGCCTTGCTCCTTGTGAGAATAAAATTTCAAAAGAAGA
TTATTCAAAAATAGTTGAAAATGCTTTAGAATATATCTACAATAAAACTAAACTTATTTCTAAATTAAAAGAAAAAATGA
AAATTTATTCAAATGATTTTCGTTTTGAAGATGCTATGAATTTAAGAGATAGAATAAAAACCATTGAAAAATCTCAAATA
AAAACAGGAATAGATCTCGCTACAAATGAAGATATTGATATTTTTGCAATAAACTCAAATAATAAAAAGGCTGTGATTGT
AAGGATGTTTTTAAGAGATGGAAAACTTACCTCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAATTTGATT
ATGAAGAAGCATATAAAAGAGCAATTATAAACTACTATGACAATGAACTTCCTCTTCTACCAAAAGAAGTTTTAATAGCA
CATGAGCTTTTAGAATTAGATGATATTGAAGAATTTTTATATACAAAATTTAATAAAAAAATAAAAATAGTAAATCCTAA
AAAAGATAAAAAAAGAGAGATTATAAATATTGCACTAAATAACTGTAATGAACTTTTAAGACTTGAAGAAGCAAAAAATC
AAACAACAATTTATGAAGAATTAAAAGAGTTATTTAATCTTAAAACTTTACCATATATTATTGAAAGTTTTGATAACTCT
CACCTTATGGGACAAGCAACAGTTGGTGCAATGATTGTTTGGAATGAAGAATTGAACTCTTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGAATCCAAAGATGAATATTCACAAATGAGAGAAATGCTAATAAGAAGAGTTGAAAGTTTTGAAAAAA
ATCCAGCACCAGATTTATGGATAATTGATGGAGGTGAAACTTTACTAAAATTAGCTTATGATATAGTTCAAAGTGTTGGA
GTAAATCTTGATATTATAGCTATTGCAAAAGAGAAAATAGATGCAAAAGCACACCGAGCAAAAGGAAGTGCAAAAGATAT
AATTCACTATAAAAATTCAAGTGGTGAATTTAAAAATTTTAATTTACTTACCAGTGATAAAAGACTACAATTCGTTCAAA
GACAAAGAGATGAAGCACACAGATTTGTAATAAATTTCCATAAAAAACAAAAAAGAACTCAAGATAAACAGATATCATTA
CTTCAAATAAAAGGTATTGGTGAAGCAAAGATCAAGAAACTTCTTTTATATTTTGGAGAATTTGAAAAGATAAAAAATGC
TTCTTTTGAAGAGTTAAAAAGTGTGTTAAATGAAAAAGACGCAAACACAATTTTAGATTATTTTAATGATTTTAAGGATT
AA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9Y5D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.254

97.716

0.511