Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AFAEC_RS06625 Genome accession   NZ_CP053837
Coordinates   1303611..1305470 (+) Length   619 a.a.
NCBI ID   WP_026805529.1    Uniprot ID   A0A2K9Y5C1
Organism   Aliarcobacter faecis strain CCUG 66484     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1298611..1310470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFAEC_RS06610 (AFAEC_1325) pnuC 1299631..1300194 (+) 564 WP_081754503.1 nicotinamide riboside transporter PnuC -
  AFAEC_RS06615 (AFAEC_1326) - 1300191..1300961 (+) 771 WP_026805531.1 choline/ethanolamine kinase family protein -
  AFAEC_RS06620 (AFAEC_1327) - 1300977..1303409 (-) 2433 WP_026805530.1 methyl-accepting chemotaxis protein -
  AFAEC_RS06625 (AFAEC_1328) uvrC 1303611..1305470 (+) 1860 WP_026805529.1 excinuclease ABC subunit UvrC Machinery gene
  AFAEC_RS06630 (AFAEC_1329) - 1305448..1306482 (+) 1035 WP_026805528.1 alanine racemase -
  AFAEC_RS06635 (AFAEC_1330) - 1306518..1308029 (+) 1512 WP_026805527.1 PAS domain S-box protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 72126.57 Da        Isoelectric Point: 9.2860

>NTDB_id=448050 AFAEC_RS06625 WP_026805529.1 1303611..1305470(+) (uvrC) [Aliarcobacter faecis strain CCUG 66484]
MNLEEKLKQLPNNAGVYQYFDNSGHLLYIGKAKNLKNRVKSYFKFSPTLQASTDLSPRIFKMISETSFIEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYINLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKKACLFYQIEKCLAPCEGKIDKDGYKKLLDEALTYIYNKIKLISKLKEKMQFYSENFRFEEAMNLRDRIKTIEKSQI
KTGIDLATNEDLDIFAIKVSNKKAALVRMFIRDGKLASSNYDFIKIDDELEFDLDEAYKRAIINYYSNDLPIIPKEIIVA
DELSEVECIEEFLQQRFSKKIKIVNPKIDKKSTIIKIALNNCDELLRLENIKNENSIYEELKELFSLRTTPNIIEAFDNS
HLMGQATVGAMIVWNENLNSFDKKAFRHYNLDSKYEYSQMREMLIRRVESFSKNPAPDLWVIDGGETLLKLAFDIIKSVG
VNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKNEKDEFKNFNLPTSDKRLQFVQRLRDEAHRFAISFHKKQKRVQDKQISL
LQIKGIGEAKIKKLLLYFGEFDKIKSSSFDELKNVLNEIDAQNIIDYFKKEECGKNIIK

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=448050 AFAEC_RS06625 WP_026805529.1 1303611..1305470(+) (uvrC) [Aliarcobacter faecis strain CCUG 66484]
ATGAATTTAGAAGAGAAACTCAAACAACTCCCAAATAATGCTGGTGTTTATCAATACTTTGACAATAGTGGACATCTTTT
ATATATAGGAAAAGCAAAAAATCTAAAAAATAGAGTAAAAAGTTACTTTAAATTTAGCCCTACTTTACAAGCTTCTACTG
ATTTAAGTCCAAGAATATTCAAGATGATTAGTGAAACCTCTTTTATAGAGTGGATAGTTGTTCCAAATGAACATGATGCT
TTAATTTTGGAAAACTCTCTAATAAAACAGCTAAAACCAAAATATAATGTACTTTTAAGAGATGACAAAACATACCCTTA
TATCTATATAAATTTAAATGAAGATTTTCCCAGACTTGAAATTACTAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATATTCAAGTGGTGCAAAAGATATGCTTGATAGTATCTATGAGATAGTTCCTCTTGTACAAAAAAAATCCTGT
ATTAAAGGAAAAAAAGCTTGTCTTTTTTATCAAATAGAAAAATGTTTAGCTCCTTGTGAAGGTAAAATAGATAAAGATGG
GTACAAAAAACTTTTAGATGAAGCTTTAACATATATTTATAATAAAATAAAATTAATATCAAAACTAAAAGAAAAAATGC
AATTTTACTCAGAAAATTTTAGATTTGAAGAGGCAATGAACTTACGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAAACTGGTATTGATTTAGCAACAAATGAAGATTTAGATATCTTTGCTATAAAAGTTTCAAATAAAAAAGCAGCTCTTGT
AAGAATGTTTATAAGAGATGGTAAACTTGCTTCTTCAAACTATGATTTTATAAAAATAGATGATGAATTAGAGTTTGATT
TAGATGAAGCTTATAAAAGGGCTATTATAAACTACTATTCAAATGATTTACCAATTATTCCAAAAGAGATAATTGTAGCC
GATGAACTTAGTGAAGTAGAGTGTATTGAAGAATTTTTACAACAAAGATTTAGTAAAAAAATAAAAATAGTAAACCCAAA
AATAGATAAAAAATCTACAATTATAAAAATTGCTTTAAATAACTGTGATGAACTTTTAAGACTTGAAAATATTAAAAATG
AGAACTCTATTTATGAAGAACTTAAAGAACTATTTTCTCTAAGAACTACTCCAAATATAATAGAAGCTTTTGACAATTCT
CATTTAATGGGACAAGCAACAGTTGGGGCAATGATTGTTTGGAATGAAAATTTAAACTCCTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGACTCAAAATATGAGTATTCTCAAATGAGGGAGATGTTAATAAGAAGAGTTGAAAGTTTTAGCAAAA
ATCCAGCTCCTGATTTGTGGGTAATTGATGGTGGTGAAACTTTGCTAAAACTTGCTTTTGATATTATAAAAAGTGTTGGA
GTAAATTTAGATATTATTGCAATTGCTAAAGAGAAAATTGATGCAAAGGCACATAGAGCAAAAGGTAGTGCAAAAGATAT
AATTCACTATAAAAATGAAAAAGATGAGTTCAAAAACTTTAACTTACCTACAAGTGATAAAAGACTACAATTCGTACAAA
GATTAAGAGATGAAGCTCATAGATTTGCAATAAGTTTTCATAAAAAACAAAAAAGAGTTCAAGATAAACAGATATCTTTA
CTTCAAATCAAAGGTATAGGTGAAGCAAAAATCAAAAAACTTCTTTTATATTTTGGAGAGTTTGACAAAATAAAAAGTTC
ATCTTTTGATGAATTAAAAAATGTTTTAAATGAAATAGATGCACAAAATATAATTGACTATTTTAAAAAGGAAGAGTGTG
GCAAAAATATTATTAAATAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(14-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9Y5C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.246

97.092

0.507