Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | M3Q_RS16840 | Genome accession | NC_018706 |
| Coordinates | 3566491..3567006 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii TYTH-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3561491..3572006
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3Q_RS16820 (M3Q_3324) | - | 3561810..3563270 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| M3Q_RS16825 (M3Q_3325) | - | 3563547..3564752 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| M3Q_RS19590 (M3Q_3326) | - | 3564771..3564914 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| M3Q_RS16835 (M3Q_3327) | omp38 | 3565039..3566109 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| M3Q_RS16840 (M3Q_3328) | fimT | 3566491..3567006 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| M3Q_RS16845 (M3Q_3329) | - | 3567115..3568290 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| M3Q_RS16850 (M3Q_3330) | - | 3568417..3568860 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| M3Q_RS16855 (M3Q_3331) | - | 3568903..3569256 (-) | 354 | WP_000457787.1 | multidrug efflux SMR transporter | - |
| M3Q_RS16860 (M3Q_3332) | - | 3569339..3569824 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| M3Q_RS16865 (M3Q_3333) | - | 3569817..3571460 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=44794 M3Q_RS16840 WP_000477147.1 3566491..3567006(+) (fimT) [Acinetobacter baumannii TYTH-1]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=44794 M3Q_RS16840 WP_000477147.1 3566491..3567006(+) (fimT) [Acinetobacter baumannii TYTH-1]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |