Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CARM_RS03135 Genome accession   NZ_CP053825
Coordinates   597388..598053 (-) Length   221 a.a.
NCBI ID   WP_139424884.1    Uniprot ID   A0A7L5I085
Organism   Campylobacter armoricus strain CCUG 73571     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 592388..603053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CARM_RS03095 (CARM_0615) - 592655..593371 (-) 717 WP_139424859.1 hypothetical protein -
  CARM_RS03100 (CARM_0616) - 593364..594233 (-) 870 WP_139424862.1 lambda exonuclease family protein -
  CARM_RS03105 (CARM_0617) - 594223..594471 (-) 249 WP_139424865.1 hypothetical protein -
  CARM_RS03110 (CARM_0618) - 594472..594675 (-) 204 WP_139424868.1 hypothetical protein -
  CARM_RS03115 (CARM_0619) - 595334..595609 (-) 276 WP_139424872.1 hypothetical protein -
  CARM_RS03120 (CARM_0620) - 595776..596546 (+) 771 WP_139424875.1 SEL1-like repeat protein -
  CARM_RS03125 (CARM_0621) - 596550..596831 (-) 282 WP_139424878.1 hypothetical protein -
  CARM_RS03130 (CARM_0622) - 596824..597324 (-) 501 WP_139424881.1 Panacea domain-containing protein -
  CARM_RS03135 (CARM_0623) CJE0566 597388..598053 (-) 666 WP_139424884.1 DNA/RNA non-specific endonuclease Regulator
  CARM_RS03140 (CARM_0624) - 598056..598778 (-) 723 WP_139424888.1 DUF3037 domain-containing protein -
  CARM_RS03145 (CARM_0625) - 598765..599553 (-) 789 WP_139424891.1 HipA family kinase -
  CARM_RS03150 (CARM_0626) - 599550..600272 (-) 723 WP_139424894.1 S24 family peptidase -
  CARM_RS03155 (CARM_0627) - 600385..600606 (+) 222 WP_139424896.1 hypothetical protein -
  CARM_RS03160 (CARM_0628) - 600603..600785 (+) 183 WP_139424899.1 hypothetical protein -
  CARM_RS03165 - 600782..600931 (-) 150 WP_161593863.1 hypothetical protein -
  CARM_RS03170 (CARM_0629) - 601113..602111 (+) 999 WP_139424901.1 hypothetical protein -
  CARM_RS03175 (CARM_0630) - 602114..602779 (+) 666 WP_236633230.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25930.81 Da        Isoelectric Point: 10.1872

>NTDB_id=447923 CARM_RS03135 WP_139424884.1 597388..598053(-) (CJE0566) [Campylobacter armoricus strain CCUG 73571]
MKKLIILPLLTTLALADYTQYKPSEEFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGKQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYTRGHTLSNASMRKTTQAQKSTFLMSNITPQNPQINQSVWNKIEKRERQAALKLGRIEVL
NLVNYDSNPQRIKNQIAIPNSYIKILKGNNFKECYKIPNHKVDNLSIKSYKFNCDILISNY

Nucleotide


Download         Length: 666 bp        

>NTDB_id=447923 CARM_RS03135 WP_139424884.1 597388..598053(-) (CJE0566) [Campylobacter armoricus strain CCUG 73571]
ATGAAAAAACTTATAATTTTACCACTATTAACAACTCTAGCCTTAGCTGATTACACACAATATAAACCGAGTGAAGAGTT
TGCGAAGTATTTTACTAAACAAAACTGCTCGCAGGTTTTAGATAAATTTTATTATATTAATTGCTATGATTATAATTATA
AAGGAACTAAAGCAGTGGCTTATAAATTAGAAGCAGATAATCTAAAAGGCAAACAAATTAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATATCGCACCACATGGAGTGATTATAAAAATAGTGGTTACACAAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACTACCCAAGCCCAAAAAAGCACTTTTTTAATGAGCAATATTACTCCACAAAATCCAC
AAATAAATCAAAGTGTTTGGAATAAGATTGAAAAAAGAGAAAGACAAGCGGCTTTAAAGCTTGGAAGAATTGAAGTTTTA
AATTTAGTTAATTATGATAGCAACCCACAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTTTAAA
AGGCAATAATTTTAAAGAATGTTATAAAATTCCAAATCATAAAGTCGATAATTTAAGTATAAAAAGCTATAAGTTTAATT
GTGATATTTTAATTAGCAATTATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5I085

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

86.047

97.285

0.837
  CJE1441 Campylobacter jejuni RM1221

86.047

97.285

0.837