Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HPY05_RS01320 Genome accession   NZ_CP053810
Coordinates   280822..282537 (+) Length   571 a.a.
NCBI ID   WP_175246732.1    Uniprot ID   -
Organism   Vibrio cholerae strain W6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275822..287537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY05_RS01300 (HPY05_01300) pilM 278115..279131 (+) 1017 WP_175246731.1 type IV pilus assembly protein PilM Machinery gene
  HPY05_RS01305 (HPY05_01305) pilN 279121..279705 (+) 585 WP_057555158.1 PilN domain-containing protein Machinery gene
  HPY05_RS01310 (HPY05_01310) pilO 279698..280288 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY05_RS01315 (HPY05_01315) pilP 280278..280796 (+) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  HPY05_RS01320 (HPY05_01320) pilQ 280822..282537 (+) 1716 WP_175246732.1 type IV pilus secretin PilQ Machinery gene
  HPY05_RS01325 (HPY05_01325) aroK 282724..283248 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY05_RS01330 (HPY05_01330) aroB 283276..284361 (+) 1086 WP_000439805.1 3-dehydroquinate synthase -
  HPY05_RS01335 (HPY05_01335) - 284416..285891 (+) 1476 WP_175246733.1 AAA family ATPase -
  HPY05_RS01340 (HPY05_01340) - 285961..286794 (+) 834 WP_000744680.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62378.45 Da        Isoelectric Point: 4.5785

>NTDB_id=447689 HPY05_RS01320 WP_175246732.1 280822..282537(+) (pilQ) [Vibrio cholerae strain W6G]
MKNGLKTYVAQTWLTLWVGFALCASSMVFSAESATANQLENIDFRVNKEKAAVLIVELASSSAVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLG
SGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=447689 HPY05_RS01320 WP_175246732.1 280822..282537(+) (pilQ) [Vibrio cholerae strain W6G]
ATGAAAAATGGATTGAAAACTTATGTCGCACAGACTTGGCTGACCTTGTGGGTTGGTTTTGCACTTTGTGCTTCTTCCAT
GGTGTTTAGTGCTGAATCCGCTACCGCCAACCAGTTGGAAAACATCGACTTTCGGGTCAACAAAGAGAAGGCGGCGGTCT
TAATTGTCGAGTTAGCTTCGTCATCGGCGGTCGTGGATGTGCAAAAAGTCCAAGAAGGGCTGAGTATTGAGCTACTGAAA
ACCGATGTGGCGGATGACAAGCTGTATCTGCTCGATGTGAAAGATTTTTCGACCCCTGTTGAGAGCGTGGAAGTATTCCG
TAAAGAGCCAAGCACACAACTTGTTGTGACTGTCGATGGGGAGTTTCAGCACGATTATACCTTGAAAGGAAAATACCTTG
AGGTCGTGATCAGTAAACTCAAAGCCGATGAAAAGCCTAAGCCCAAGAGTGTCTTGGAAAAAGAAGGCAAGCTTATCTCA
ATTAACTTCCAAGATATTCCGGTGCGTAACGTACTGCAGCTGATTGCCGATTATAACGGTTTCAACTTAGTGGTTTCCGA
TTCGGTGGTGGGTAACCTGACTTTACGCTTGGATGGCGTGCCTTGGCAGCAAGTGTTGGACATTATTCTGCAAGTCAAAG
GGCTCGATAAGCGGGTCGATGGCAATGTGATTTTGATTGCGCCAAAAGAGGAACTCGACTTGCGCGAGAAACAAGCGCTC
GAAAAAGCCCGTTTAGCAGAAGAGTTGGGCGATTTAAAATCAGAAATCATCAAGATTAACTTTGCCAAAGCGTCTGACAT
TGCGGCGATGATCGGCGGTGAAGGCAACGTCAACATGTTGTCTGAACGAGGTTCGATCAGCATCGATGAACGAACTAACT
CGCTATTGATCCGAGAGCTGCCCGATAACATTGCCGTGATCCGCGAGATCATTGAATCGCTGGATATTCCGGTCAAACAA
GTTCAAATCGAAGCGCGGATTGTCACCGTCAAAGAAGGTAACTTGGAGGAGCTGGGGGTACGCTGGGGCGTAATGTCGAC
TAATGGTAGTCACTCCGTGGGTGGAACCATTGAAAGTAACTTATGGCAGCAAGGTTTATTGGCAGATGATGAATTTCCGG
TGGATGAATTCTTAAATGTGAATTTGGCTTCCACCTCTGCCAATGCGTCTTCGATTGCTTTCCAAGTCGCTAAATTGGGC
TCAGGTACGTTGTTGGATTTGGAGCTTTCAGCATTACAAAATGAATCGAAGGCCGAAATCATCTCTAGCCCTCGTTTGAT
TACCACTAATAAACAGCCTGCCTATATTGAGCAAGGTACTGAGATCCCTTATCTGGAATCGTCTTCCAGTGGTGCCTCTA
CGGTCGCGTTTAAAAAAGCGGTATTAAGCTTGAAGGTGACACCACAAATCACCCCAGATAACCGCTTGGTGCTCGACTTG
AGTGTGACCCAAGACCGACGCGGTGAAACGGTGAAAACCGGTACGGGTGAAGCGGTATCGATCGATACTCAGCGTATTGG
CACTCAAGTGTTGGTGAATAACGGAGAAACTGTGGTGTTGGGTGGCATTTTCCAACACAGCATCAATAATTCGGTAGATA
AGGTGCCACTGCTGGGGGACTTGCCTGTTTTGGGGGCGTTATTCAGACGAACCTATGAGCAAATGGGCAAAAGTGAACTG
CTGATTTTTGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(411-569)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

99.299

100

0.993
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

99.299

100

0.993
  pilQ Vibrio campbellii strain DS40M4

78.182

96.322

0.753
  pilQ Legionella pneumophila strain ERS1305867

42.963

94.571

0.406
  pilQ Legionella pneumophila strain Lp02

42.963

94.571

0.406
  comQ Acinetobacter baylyi ADP1

39.161

100

0.392
  pilQ Acinetobacter baumannii D1279779

37.99

100

0.391
  pilQ Acinetobacter baumannii strain A118

37.99

100

0.391
  pilQ Pseudomonas aeruginosa PAK

39.13

96.673

0.378