Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ST90728_RS01900 Genome accession   NZ_CP065479
Coordinates   344226..344888 (+) Length   220 a.a.
NCBI ID   WP_347114288.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339226..349888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS01875 (ST90728_01885) - 339544..340254 (+) 711 WP_002947183.1 ABC transporter ATP-binding protein -
  ST90728_RS01880 (ST90728_01890) - 340390..341050 (+) 661 Protein_318 CBS and ACT domain-containing protein -
  ST90728_RS01885 (ST90728_01895) cysK 341217..342143 (-) 927 WP_002947179.1 cysteine synthase A -
  ST90728_RS01890 (ST90728_01900) - 342245..342871 (-) 627 WP_002949745.1 YigZ family protein -
  ST90728_RS01895 (ST90728_01905) comFA/cflA 342926..344245 (+) 1320 WP_179971190.1 DEAD/DEAH box helicase Machinery gene
  ST90728_RS01900 (ST90728_01910) comFC/cflB 344226..344888 (+) 663 WP_347114288.1 ComF family protein Machinery gene
  ST90728_RS01905 (ST90728_01915) raiA 344967..345515 (+) 549 WP_011680772.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26050.43 Da        Isoelectric Point: 9.1304

>NTDB_id=447559 ST90728_RS01900 WP_347114288.1 344226..344888(+) (comFC/cflB) [Streptococcus thermophilus strain 90728]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLEDLNVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=447559 ST90728_RS01900 WP_347114288.1 344226..344888(+) (comFC/cflB) [Streptococcus thermophilus strain 90728]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGAGGATTTAAATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445