Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ST4052_RS06420 Genome accession   NZ_CP065476
Coordinates   1236533..1237177 (-) Length   214 a.a.
NCBI ID   WP_002951384.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4052     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231533..1242177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4052_RS06395 (ST4052_06470) - 1233634..1234632 (-) 999 WP_011226284.1 NAD(P)/FAD-dependent oxidoreductase -
  ST4052_RS06400 (ST4052_06475) trmD 1234634..1235353 (-) 720 WP_164178206.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ST4052_RS06405 (ST4052_06480) rimM 1235343..1235861 (-) 519 WP_011226286.1 ribosome maturation factor RimM -
  ST4052_RS06420 (ST4052_06495) vraR 1236533..1237177 (-) 645 WP_002951384.1 response regulator transcription factor Regulator
  ST4052_RS06425 (ST4052_06500) - 1237167..1238177 (-) 1011 WP_011227402.1 sensor histidine kinase -
  ST4052_RS06430 (ST4052_06505) liaF 1238174..1238872 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  ST4052_RS06435 - 1239138..1239293 (-) 156 WP_011226290.1 ion channel -
  ST4052_RS06440 (ST4052_06515) stkP/pknB 1239930..1241801 (-) 1872 WP_011226292.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24048.39 Da        Isoelectric Point: 4.5864

>NTDB_id=447287 ST4052_RS06420 WP_002951384.1 1236533..1237177(-) (vraR) [Streptococcus thermophilus strain 4052]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAENGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447287 ST4052_RS06420 WP_002951384.1 1236533..1237177(-) (vraR) [Streptococcus thermophilus strain 4052]
ATGTCGAATAAGATTAATGTAATTTTGGTAGATGATCATGAAATGGTTCGTTTAGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTGGTTGGAGAGGCAGAAAACGGCCGTGAGGGTGTCGATCTTGCCCTGGAGCTACGACCAGATGTCG
TTGTTATGGACCTTGTTATGCCTGAGCTAGATGGTGTTCAGGCGACTTTGGAATTGCTAAAAGAATGGCCTGAAGCTAAG
ATTCTAGTTTTGACCAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGCGCCAAAGGCTATATGCTTAA
AACGAGCAGTGCAGCAGAGATTCTAAATAGTATCCGTAAGGTTTACCGTGGAGAGGAAGCTATCGAAACTGAGGTAGACA
ATAAGATTAAATACCATGATAGTCACCCGAACTTACATGATGACTTGACCGCGCGCGAACGTGATATCTTAGCCCTCCTA
GCTAAAGGCTATGACAATCAAACCATTGCTAACGAACTTTTTATTTCTTTAAAAACTGTCAAGACTCATGTGTCTAATAT
CCTTGGGAAATTAAATGTTGATGACCGTACTCAGGCTGTAGTTTATGCCTTTAGACATCATCTGGTTTCACAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379