Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HPQ66_RS14415 Genome accession   NZ_CP053764
Coordinates   2988091..2988735 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain B268     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983091..2993735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS14380 (HPQ66_14430) - 2984270..2984701 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  HPQ66_RS14385 (HPQ66_14435) - 2984701..2985042 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  HPQ66_RS14390 (HPQ66_14440) - 2985035..2986522 (+) 1488 WP_032867186.1 Na+/H+ antiporter subunit D -
  HPQ66_RS14395 (HPQ66_14445) - 2986528..2987004 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  HPQ66_RS14400 (HPQ66_14450) - 2987004..2987288 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  HPQ66_RS14405 (HPQ66_14455) mnhG 2987272..2987646 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  HPQ66_RS14410 (HPQ66_14460) - 2987686..2988069 (-) 384 WP_061047114.1 hotdog fold thioesterase -
  HPQ66_RS14415 (HPQ66_14465) comA 2988091..2988735 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  HPQ66_RS14420 (HPQ66_14470) comP 2988816..2991107 (-) 2292 WP_042635452.1 histidine kinase Regulator
  HPQ66_RS14425 (HPQ66_14475) comX 2991119..2991283 (-) 165 WP_007613432.1 competence pheromone ComX -
  HPQ66_RS14430 (HPQ66_14480) - 2991283..2992194 (-) 912 WP_079891433.1 polyprenyl synthetase family protein -
  HPQ66_RS14435 (HPQ66_14485) degQ 2992346..2992486 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HPQ66_RS14440 (HPQ66_14490) - 2992949..2993290 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=447008 HPQ66_RS14415 WP_003152052.1 2988091..2988735(-) (comA) [Bacillus velezensis strain B268]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447008 HPQ66_RS14415 WP_003152052.1 2988091..2988735(-) (comA) [Bacillus velezensis strain B268]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864