Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   I5Z97_RS05750 Genome accession   NZ_CP065386
Coordinates   1173435..1175711 (+) Length   758 a.a.
NCBI ID   WP_196980409.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168435..1180711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS05730 (I5Z97_05720) galU 1168526..1169413 (-) 888 WP_160428375.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I5Z97_RS05735 (I5Z97_05725) csrA 1169594..1169779 (-) 186 WP_021109569.1 carbon storage regulator CsrA -
  I5Z97_RS05740 (I5Z97_05730) alaS 1169843..1172470 (-) 2628 WP_075630722.1 alanine--tRNA ligase -
  I5Z97_RS05745 (I5Z97_05735) uspA 1172695..1173120 (-) 426 WP_021112353.1 universal stress protein UspA -
  I5Z97_RS05750 (I5Z97_05740) rec2 1173435..1175711 (+) 2277 WP_196980409.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I5Z97_RS05755 (I5Z97_05745) - 1175879..1176175 (-) 297 WP_005711556.1 YciI family protein -
  I5Z97_RS05760 (I5Z97_05750) yciA 1176187..1176627 (-) 441 WP_010786900.1 acyl-CoA thioester hydrolase YciA -
  I5Z97_RS05765 (I5Z97_05755) - 1176611..1177174 (-) 564 WP_005711560.1 septation protein A -
  I5Z97_RS05770 (I5Z97_05760) - 1177183..1177911 (-) 729 WP_196980153.1 hypothetical protein -
  I5Z97_RS05775 (I5Z97_05765) yfbV 1178090..1178524 (+) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  I5Z97_RS05780 (I5Z97_05770) tadA 1178506..1179042 (-) 537 WP_196980154.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86168.79 Da        Isoelectric Point: 9.4615

>NTDB_id=446724 I5Z97_RS05750 WP_196980409.1 1173435..1175711(+) (rec2) [Glaesserella parasuis strain LHDR_HPS_1_2]
MSIDRVCLMLFFGLLPLIVLPASWLGYVMVFSLALALWGVWRGKLGILLLGGVLAVSYAQIIQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELILKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWAVKAGQWL
LLRFRCLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAKWGIDWIEPFSHHWLYLSVAQQWGLICLNLLILIGLYGVFQQRFSIRYGLAT
VALPLGLWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIGGNQWQFSTIHLEAIYPLQLSERAKNEHSCVLRVSIG
KYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHTQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=446724 I5Z97_RS05750 WP_196980409.1 1173435..1175711(+) (rec2) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGATGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATACAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCAGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGATATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCTCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGGCGGTGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTGTCTAAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGCTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTGCTATTAGTCGTCTTTGATCCGCTGACGTTACTG
TCTGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAATTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTATTAGCCAATTTGATCATTGTTCCACTTTAT
AGTTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAAAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGCTCAACAATGGGGATTAA
TATGCCTTAATTTATTGATTTTAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTATCCGTTATGGGTTGGCAACA
GTGGCATTGCCTTTAGGATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCGCTTGTAAAATGGGTGAA
TTTCGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCTATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTAGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGGAGGCAATCAGTGGCAGTTCAGCACAATAC
ACCTTGAAGCGATTTATCCTTTGCAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
AAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACCTTGTTAGCTCACACACAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAGGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(191-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.136

95.251

0.392