Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   I3J23_RS11955 Genome accession   NZ_CP065159
Coordinates   2324841..2325275 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319841..2330275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS11925 (I3J23_11925) - 2320513..2321373 (+) 861 WP_015388697.1 SDR family oxidoreductase -
  I3J23_RS11930 (I3J23_11930) - 2321386..2321889 (+) 504 WP_057080613.1 D-lyxose/D-mannose family sugar isomerase -
  I3J23_RS11935 (I3J23_11935) - 2321976..2322599 (+) 624 WP_207579478.1 GNAT family protein -
  I3J23_RS11940 (I3J23_11940) - 2322606..2323028 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  I3J23_RS11945 (I3J23_11945) - 2323527..2324336 (+) 810 WP_014304362.1 lipid II flippase Amj family protein -
  I3J23_RS11950 (I3J23_11950) - 2324374..2324664 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  I3J23_RS11955 (I3J23_11955) lrpC 2324841..2325275 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  I3J23_RS11960 (I3J23_11960) - 2325339..2327525 (+) 2187 WP_003156261.1 DNA topoisomerase III -
  I3J23_RS11965 (I3J23_11965) - 2327758..2328843 (+) 1086 WP_173602933.1 lipoprotein YdaJ -
  I3J23_RS11970 (I3J23_11970) - 2328824..2329672 (+) 849 WP_043866841.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=445820 I3J23_RS11955 WP_003156263.1 2324841..2325275(+) (lrpC) [Bacillus amyloliquefaciens strain GXU-1]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=445820 I3J23_RS11955 WP_003156263.1 2324841..2325275(+) (lrpC) [Bacillus amyloliquefaciens strain GXU-1]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGATATTGATCAAAAAAAGATCGGGCTCCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATATGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799