Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   IVB58_RS14935 Genome accession   NZ_CP065051
Coordinates   3172294..3172809 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3167294..3177809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS14915 (IVB58_14865) - 3167634..3169094 (+) 1461 WP_000004971.1 amino acid permease -
  IVB58_RS14920 (IVB58_14870) - 3169371..3170576 (+) 1206 WP_000512699.1 RtcB family protein -
  IVB58_RS14925 (IVB58_14875) - 3170595..3170738 (+) 144 WP_162138624.1 hypothetical protein -
  IVB58_RS14930 (IVB58_14880) omp38 3170863..3171912 (-) 1050 WP_000777873.1 outer membrane protein Omp38 -
  IVB58_RS14935 (IVB58_14885) fimT 3172294..3172809 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  IVB58_RS14940 (IVB58_14890) - 3172918..3174093 (+) 1176 WP_243491767.1 thiolase family protein -
  IVB58_RS14945 (IVB58_14895) - 3174220..3174663 (+) 444 WP_001176580.1 VOC family protein -
  IVB58_RS14950 (IVB58_14900) - 3174706..3175059 (-) 354 WP_000457783.1 SMR family transporter -
  IVB58_RS14955 (IVB58_14905) - 3175142..3175627 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  IVB58_RS14960 (IVB58_14910) - 3175620..3177263 (-) 1644 WP_000281768.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=445533 IVB58_RS14935 WP_000477151.1 3172294..3172809(+) (fimT) [Acinetobacter baumannii strain 2016GDAB1]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=445533 IVB58_RS14935 WP_000477151.1 3172294..3172809(+) (fimT) [Acinetobacter baumannii strain 2016GDAB1]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427