Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HNO52_RS20030 Genome accession   NZ_CP053382
Coordinates   4298919..4300424 (-) Length   501 a.a.
NCBI ID   WP_197566912.1    Uniprot ID   A0A7M1QGN0
Organism   Halomonas sp. MCCC 1A13316     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4293919..4305424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO52_RS20015 (HNO52_20005) - 4296258..4297241 (+) 984 WP_197566909.1 alpha/beta hydrolase -
  HNO52_RS20020 (HNO52_20010) - 4297235..4297714 (+) 480 WP_197566910.1 hypothetical protein -
  HNO52_RS20025 (HNO52_20015) - 4297745..4298785 (-) 1041 WP_197566911.1 sodium:calcium antiporter -
  HNO52_RS20030 (HNO52_20020) comM 4298919..4300424 (-) 1506 WP_197566912.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HNO52_RS20035 (HNO52_20025) - 4300500..4300829 (-) 330 WP_197566913.1 accessory factor UbiK family protein -
  HNO52_RS20040 (HNO52_20030) - 4301121..4301459 (+) 339 WP_163559241.1 P-II family nitrogen regulator -
  HNO52_RS20045 (HNO52_20035) - 4301497..4302822 (+) 1326 WP_197566914.1 ammonium transporter -
  HNO52_RS20050 (HNO52_20040) glnK 4302957..4303295 (+) 339 WP_086509163.1 P-II family nitrogen regulator -
  HNO52_RS20055 (HNO52_20045) - 4303401..4304177 (-) 777 WP_197566915.1 ferredoxin--NADP reductase -
  HNO52_RS20060 (HNO52_20050) - 4304324..4305250 (+) 927 WP_197566916.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54092.36 Da        Isoelectric Point: 7.4059

>NTDB_id=444644 HNO52_RS20030 WP_197566912.1 4298919..4300424(-) (comM) [Halomonas sp. MCCC 1A13316]
MLAIVATRAGLGLEAPEVQVEVHLANGLPGMTLVGLPEAAVKESRERVRSALVNAGFDFPNTRRIVLNLAPADLPKVGGR
FDLPIALGILIASGQLPGEALEEIESVGELALDGRLRPINGVLPLALAARRAGRKLIVPKENADEAALAGDLQVLPAEHL
LDVMAHLLGQKPIAAHRLEAPPVTDNREGDLAEVRGQHQARRALEIAAAGSHNLLFAGPPGTGKTMLASRLPGILPELTE
EEALEVAAIRSVCGLPLAEQWGRRPFRAPHHTASAVALVGGGSWPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GRIHIARANHERRFPARFQLVAAMNPCPCGHLGDPRQACQCTAAQIQRYQSRLSGPLLDRIDLQIEVPALPPEQLTSREV
GESSAEVRARVMAARERQYARGALNAHLGGRELEAACALSTADRVWLAGVLERLRLSARAYHRVLRVALTLADLAAKPHP
ERGELMEAIGYRQLDRQLRQG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=444644 HNO52_RS20030 WP_197566912.1 4298919..4300424(-) (comM) [Halomonas sp. MCCC 1A13316]
ATGCTGGCGATCGTTGCCACACGGGCCGGCCTGGGGCTGGAAGCGCCCGAGGTACAGGTCGAGGTACACCTGGCCAATGG
CCTGCCGGGGATGACGTTGGTGGGCCTGCCCGAGGCCGCCGTCAAGGAGAGCCGTGAGCGGGTGCGCAGCGCCCTCGTCA
ATGCCGGCTTCGATTTTCCCAATACGCGAAGAATCGTGCTCAACCTGGCGCCCGCCGACCTGCCCAAGGTCGGCGGGCGC
TTCGATCTGCCCATTGCACTGGGCATCCTGATCGCCTCCGGCCAGCTTCCCGGCGAGGCCCTCGAAGAGATCGAGAGCGT
CGGCGAGCTGGCGCTGGACGGTCGCCTGCGCCCCATCAACGGCGTGTTGCCGCTGGCCCTGGCGGCACGCCGGGCGGGGC
GCAAGCTGATCGTGCCCAAGGAGAACGCCGACGAAGCGGCACTGGCCGGAGATCTTCAGGTACTACCGGCCGAGCACCTG
CTCGACGTGATGGCGCACCTGCTGGGGCAGAAGCCGATCGCCGCGCATCGCCTCGAGGCGCCACCCGTCACCGATAACCG
CGAGGGCGACCTGGCCGAGGTACGCGGCCAGCACCAGGCCCGCCGTGCGCTGGAGATCGCCGCGGCCGGTTCGCACAACC
TGCTCTTCGCCGGCCCGCCCGGCACCGGCAAGACCATGCTGGCCAGCCGCCTGCCGGGTATCTTGCCGGAACTCACCGAG
GAGGAGGCGCTGGAAGTGGCCGCCATCCGTTCGGTGTGCGGCCTGCCGCTGGCCGAACAGTGGGGGCGTCGGCCCTTCCG
CGCGCCGCACCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCTCCTGGCCGCGGCCTGGAGAGATCTCGCTGGCTC
ACCACGGCGTGCTGTTCCTCGACGAGCTGCCGGAATTCAGCCGCCACGTGCTCGAGGTGATGCGCGAGCCGATGGAGTCG
GGGCGCATCCACATCGCTCGCGCCAATCATGAGCGCCGCTTCCCCGCCCGCTTTCAACTGGTAGCGGCAATGAACCCGTG
CCCCTGCGGTCACTTGGGCGATCCGCGCCAGGCCTGCCAGTGCACCGCCGCGCAGATCCAGCGCTACCAGTCGCGGCTCT
CGGGACCGCTACTCGATCGTATCGACCTGCAGATCGAAGTGCCGGCGCTGCCGCCGGAGCAGCTCACGTCTCGCGAAGTG
GGCGAAAGCTCGGCGGAGGTGCGCGCCCGGGTCATGGCTGCCCGCGAGCGCCAGTATGCGCGCGGTGCGCTCAACGCCCA
CCTCGGCGGGCGCGAGCTGGAGGCCGCCTGTGCCCTGTCGACGGCCGACCGTGTCTGGCTGGCCGGCGTGCTAGAGCGCC
TGCGCCTCTCGGCGCGCGCCTATCACCGGGTGCTGCGGGTGGCGCTGACGCTGGCCGACCTGGCCGCCAAACCGCATCCG
GAGCGCGGCGAGCTGATGGAGGCGATTGGGTACCGCCAGCTCGATAGGCAGTTGCGCCAGGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(20-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1QGN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.064

100

0.563
  comM Vibrio campbellii strain DS40M4

55.976

100

0.561
  comM Haemophilus influenzae Rd KW20

54.348

100

0.549
  comM Glaesserella parasuis strain SC1401

52.767

100

0.533
  comM Legionella pneumophila str. Paris

49.395

99.002

0.489
  comM Legionella pneumophila strain ERS1305867

49.395

99.002

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.358

100

0.483