Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HNO52_RS02885 Genome accession   NZ_CP053382
Coordinates   623666..624730 (+) Length   354 a.a.
NCBI ID   WP_197567573.1    Uniprot ID   A0A7M1Q770
Organism   Halomonas sp. MCCC 1A13316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 618666..629730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO52_RS02870 (HNO52_02865) fdxA 619525..619848 (-) 324 WP_197567570.1 ferredoxin FdxA -
  HNO52_RS02875 (HNO52_02870) mutS 620011..622599 (-) 2589 WP_197567571.1 DNA mismatch repair protein MutS -
  HNO52_RS02880 (HNO52_02875) - 622843..623355 (+) 513 WP_197567572.1 CinA family protein -
  HNO52_RS02885 (HNO52_02880) recA 623666..624730 (+) 1065 WP_197567573.1 recombinase RecA Machinery gene
  HNO52_RS02890 (HNO52_02885) - 624734..625213 (+) 480 WP_197567574.1 regulatory protein RecX -
  HNO52_RS02895 (HNO52_02890) alaS 625388..627997 (+) 2610 WP_197567580.1 alanine--tRNA ligase -
  HNO52_RS02900 (HNO52_02895) - 628099..629349 (+) 1251 WP_167112299.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37931.24 Da        Isoelectric Point: 4.9293

>NTDB_id=444629 HNO52_RS02885 WP_197567573.1 623666..624730(+) (recA) [Halomonas sp. MCCC 1A13316]
MAQDENRSKALNAALSQIERQFGKGTVMRLGDTPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCNLVDKAGAWYSYKGNKIGQGKANAAQFLEDNPAVMEEI
ESQIRGQLLATVAPKEEEAGEPVAADAEREDDLL

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=444629 HNO52_RS02885 WP_197567573.1 623666..624730(+) (recA) [Halomonas sp. MCCC 1A13316]
ATGGCACAGGATGAAAACCGTTCCAAGGCATTGAATGCCGCCCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTGGGCGATACGCCACGGGTGGTGATGCCCTCGGTGTCGACCGGCTCGCTGGGGCTGGACATCGCACTGGGCA
TCGGCGGCCTGCCCTACGGTCGCGTAGTGGAGATCTTCGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCCAGGCCCAGAAACAGGGCAAGACCTGCGCCTTCATCGATGCCGAACACGCGCTCGACCCGAGCTACGCCGAGAA
GCTCGGCGTCAACCTCGACGATCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATCATCATCGATTCGGTGGCGGCGTTGACCCCGCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCCACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGTGGCA
ACGCGCTCAAGTTCTACGCCAGCGTGCGCCTGGATATCCGCCGCACCGGCTCGGTCAAGCAGGGCGACGAGGTGACCGGC
AACGAGACTCGCGTCAAGGTGGTGAAGAACAAGGTGGCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGTATCTACCATGCCGGCGAAGTGGTGGACCTGGGCGTGCAGTGCAACCTGGTCGACAAGGCCGGTGCCTGGTACAGCT
ACAAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCGGTCATGGAAGAGATC
GAGAGCCAGATCCGCGGCCAATTGCTGGCCACGGTCGCGCCCAAGGAAGAGGAGGCCGGGGAGCCGGTGGCGGCTGACGC
CGAGCGCGAGGACGACCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1Q770

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.736

98.305

0.774
  recA Acinetobacter baylyi ADP1

73.371

99.718

0.732
  recA Acinetobacter baumannii D1279779

75.915

92.655

0.703
  recA Glaesserella parasuis strain SC1401

68.195

98.588

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.779

92.09

0.661
  recA Vibrio cholerae strain A1552

71.779

92.09

0.661
  recA Neisseria gonorrhoeae MS11

70.497

90.96

0.641
  recA Neisseria gonorrhoeae MS11

70.497

90.96

0.641
  recA Neisseria gonorrhoeae strain FA1090

70.497

90.96

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.656

88.701

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.29

96.328

0.59
  recA Helicobacter pylori 26695

62.577

92.09

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

94.068

0.576
  recA Helicobacter pylori strain NCTC11637

61.963

92.09

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

90.395

0.565
  recA Streptococcus mutans UA159

56.25

99.435

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.457

95.198

0.556
  recA Streptococcus mitis SK321

59.509

92.09

0.548
  recA Streptococcus mitis NCTC 12261

59.202

92.09

0.545
  recA Streptococcus pyogenes NZ131

58.769

91.808

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.751

92.938

0.537
  recA Streptococcus pneumoniae D39

57.975

92.09

0.534
  recA Streptococcus pneumoniae Rx1

57.975

92.09

0.534
  recA Streptococcus pneumoniae R6

57.975

92.09

0.534
  recA Streptococcus pneumoniae TIGR4

57.975

92.09

0.534
  recA Lactococcus lactis subsp. cremoris KW2

56.656

91.243

0.517