Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HL653_RS13250 Genome accession   NZ_CP053346
Coordinates   2850781..2851851 (+) Length   356 a.a.
NCBI ID   WP_171744927.1    Uniprot ID   A0A6M5JD22
Organism   Sphingomonas sp. AP4-R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2845781..2856851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL653_RS13230 (HL653_13250) dapA 2846290..2847165 (+) 876 WP_171744923.1 4-hydroxy-tetrahydrodipicolinate synthase -
  HL653_RS13235 (HL653_13255) smpB 2847286..2847768 (+) 483 WP_171744924.1 SsrA-binding protein SmpB -
  HL653_RS13240 (HL653_13260) - 2847788..2850193 (+) 2406 WP_171744925.1 ATP-binding protein -
  HL653_RS13245 (HL653_13265) - 2850302..2850658 (+) 357 WP_171744926.1 response regulator -
  HL653_RS13250 (HL653_13270) recA 2850781..2851851 (+) 1071 WP_171744927.1 recombinase RecA Machinery gene
  HL653_RS13255 (HL653_13275) - 2852185..2853456 (+) 1272 WP_171744928.1 MFS transporter -
  HL653_RS13260 (HL653_13280) rsmD 2853416..2853970 (-) 555 WP_171744929.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HL653_RS13265 (HL653_13285) - 2853967..2855340 (-) 1374 WP_171744930.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38151.55 Da        Isoelectric Point: 5.3432

>NTDB_id=444171 HL653_RS13250 WP_171744927.1 2850781..2851851(+) (recA) [Sphingomonas sp. AP4-R1]
MAASLKVIDGNMASANERQKALDAALAQIDRAFGKGSAMKLGSREKVEIEAISTGSLGLDIALGIGGLPRGRIIEVYGPE
SSGKTTLALHAIAEAQRAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLIRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKITGSISRSRTLVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDDIVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKVGEILDLGVKAGVVEKSGAWFSYDSIRIGQGRENAKTY
LRENPEVCARLERAIRGNASEVADQMMSGPEPDDDL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=444171 HL653_RS13250 WP_171744927.1 2850781..2851851(+) (recA) [Sphingomonas sp. AP4-R1]
ATGGCGGCTTCCCTGAAGGTGATTGACGGCAACATGGCGAGTGCGAACGAACGGCAGAAGGCGCTGGATGCGGCGCTGGC
GCAGATAGACCGGGCTTTCGGAAAGGGCTCGGCGATGAAGCTGGGCAGCCGCGAGAAGGTGGAGATCGAGGCGATCTCGA
CGGGATCGCTGGGTCTGGATATCGCGCTCGGCATCGGCGGTCTGCCGCGCGGGCGCATCATCGAAGTGTATGGGCCGGAA
TCGTCGGGCAAGACGACGCTGGCGCTCCACGCCATCGCCGAGGCGCAGCGCGCCGGCGGCACGGCGGCCTTCGTCGATGC
CGAACATGCGCTCGATCCGGTCTACGCCAAGAAACTGGGCGTCGATATCGACGAGCTGATCGTCTCGCAGCCCGACACGG
GCGAGCAGGCGCTGGAAATCACCGATACGCTGATCCGCTCGAACGCGATCGACGTGCTGGTGGTCGATTCGGTGGCCGCG
CTGGTGCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCT
CCGCAAGATCACCGGATCGATCAGCCGCAGCCGCACGCTCGTCATCTTCATCAATCAGCTGCGCATGAAGATCGGCGTGA
TGTACGGCAATCCGGAGACGACGACGGGCGGCAACGCGCTGAAATTCTACGCGTCGGTCCGTCTCGACATCCGCCGCACC
GGCCAGATCAAGGATCGCGACGATATCGTCGGCAACACGACCCGCGTGAAGGTCGTGAAGAACAAGGTCGCGCCGCCGTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAAGGCATCTCGAAGGTCGGCGAGATCCTCGATCTCGGCGTGAAGGCCG
GCGTGGTCGAGAAGTCCGGCGCGTGGTTCAGCTATGACAGCATCCGCATCGGCCAGGGCCGCGAGAATGCGAAGACCTAT
CTGCGGGAAAATCCCGAGGTCTGCGCGCGGCTGGAGCGTGCGATCCGGGGCAATGCCTCGGAGGTGGCGGACCAGATGAT
GAGCGGACCGGAGCCTGACGACGATCTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M5JD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.787

89.607

0.643
  recA Vibrio cholerae strain A1552

67.066

93.82

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.066

93.82

0.629
  recA Glaesserella parasuis strain SC1401

65.782

95.225

0.626
  recA Neisseria gonorrhoeae MS11

68.421

90.73

0.621
  recA Neisseria gonorrhoeae MS11

68.421

90.73

0.621
  recA Neisseria gonorrhoeae strain FA1090

68.421

90.73

0.621
  recA Acinetobacter baylyi ADP1

64.223

95.787

0.615
  recA Helicobacter pylori strain NCTC11637

62.286

98.315

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

67.913

90.169

0.612
  recA Helicobacter pylori 26695

62

98.315

0.61
  recA Acinetobacter baumannii D1279779

68.025

89.607

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

95.506

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

91.854

0.601
  recA Ralstonia pseudosolanacearum GMI1000

68.506

86.517

0.593
  recA Streptococcus pneumoniae R6

61.243

94.944

0.581
  recA Streptococcus pneumoniae Rx1

61.243

94.944

0.581
  recA Streptococcus pneumoniae D39

61.243

94.944

0.581
  recA Streptococcus pneumoniae TIGR4

61.243

94.944

0.581
  recA Streptococcus mitis SK321

63.889

91.011

0.581
  recA Streptococcus mitis NCTC 12261

63.272

91.011

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.292

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

63.24

90.169

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

90.73

0.567
  recA Streptococcus mutans UA159

60.923

91.292

0.556
  recA Lactococcus lactis subsp. cremoris KW2

60.494

91.011

0.551