Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HLD05_RS04630 Genome accession   NZ_CP053336
Coordinates   952573..953187 (-) Length   204 a.a.
NCBI ID   WP_020843815.1    Uniprot ID   S5MU36
Organism   Salmonella bongori serovar 48:z81:- strain 08-0158     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 947573..958187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLD05_RS04615 helD 947800..949854 (-) 2055 WP_020843817.1 DNA helicase IV -
  HLD05_RS04620 - 949977..950423 (+) 447 WP_001261225.1 YccF domain-containing protein -
  HLD05_RS04625 yccS 950442..952595 (+) 2154 WP_000950885.1 YccS family putative transporter -
  HLD05_RS04630 sxy/tfoX 952573..953187 (-) 615 WP_020843815.1 TfoX/Sxy family DNA transformation protein Regulator
  HLD05_RS04635 sulA 953404..953913 (+) 510 WP_020843814.1 SOS-induced cell division inhibitor SulA -
  HLD05_RS04640 ompA 954270..955319 (+) 1050 WP_024143202.1 porin OmpA -
  HLD05_RS04645 matP 955390..955842 (-) 453 WP_000877171.1 macrodomain Ter protein MatP -
  HLD05_RS04650 - 956028..957788 (+) 1761 WP_024143201.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23622.38 Da        Isoelectric Point: 9.2752

>NTDB_id=444100 HLD05_RS04630 WP_020843815.1 952573..953187(-) (sxy/tfoX) [Salmonella bongori serovar 48:z81:- strain 08-0158]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVSYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKFSLEAAMKEKHSRFSQHRLKDLPNMTFHLETLLNESGIKDESMLRVLGAKMCWLRLRQNN
PLLTVKILYALEGAIVGVHEAALPTNRRQELADWVHSLTAAQAR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=444100 HLD05_RS04630 WP_020843815.1 952573..953187(-) (sxy/tfoX) [Salmonella bongori serovar 48:z81:- strain 08-0158]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCATCTTTGGGGACGATTCAGTATCGATCTTT
ATTCGGCAGCTATAGCCTGACCGTGGAAGATACCGTTTTTGCGATGGTGGCGAATGGCGAGCTCTATCTCCGCGCCTGTG
AACAAAGCGTATCCTATTGTGTGAAGCATCCTCCTGTCTGGCTCACGTTTATGAAATGTGGACGCCCCGTTATGCTCAAC
TATTACCGGGTCGATGAAAGCCTCTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTTTTCTCTTGAAGCGGCAAT
GAAAGAAAAACATAGCCGTTTTTCACAGCACAGGCTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAGCATGTTACGCGTACTAGGCGCTAAAATGTGCTGGCTGAGGCTGCGACAAAATAAT
CCGTTGCTAACGGTAAAGATCCTGTATGCGTTGGAAGGCGCCATTGTTGGCGTACATGAGGCGGCGCTCCCGACAAATCG
TCGCCAGGAGCTTGCCGACTGGGTGCATTCGCTTACGGCTGCGCAAGCCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5MU36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.248

99.02

0.745