Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HHM66_RS02935 Genome accession   NZ_CP053074
Coordinates   555420..556229 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 550420..561229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS02910 (HHM66_02915) - 550793..551494 (-) 702 WP_015057398.1 amino acid ABC transporter permease -
  HHM66_RS02915 (HHM66_02920) - 551508..552308 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  HHM66_RS02920 (HHM66_02925) - 552308..553102 (-) 795 WP_015057400.1 amino acid ABC transporter ATP-binding protein -
  HHM66_RS02925 (HHM66_02930) vicR 553361..554071 (+) 711 WP_003057225.1 response regulator YycF Regulator
  HHM66_RS02930 (HHM66_02935) vicK 554064..555416 (+) 1353 WP_014612101.1 cell wall metabolism sensor histidine kinase VicK Regulator
  HHM66_RS02935 (HHM66_02940) vicX 555420..556229 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  HHM66_RS02940 (HHM66_02945) rnc 556987..557679 (+) 693 WP_003057240.1 ribonuclease III -
  HHM66_RS02945 (HHM66_02950) smc 557680..561225 (+) 3546 WP_015057401.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=442773 HHM66_RS02935 WP_003059746.1 555420..556229(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=442773 HHM66_RS02935 WP_003059746.1 555420..556229(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766