Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DBV21_RS02005 Genome accession   NZ_CP053029
Coordinates   436651..438756 (+) Length   701 a.a.
NCBI ID   WP_010438770.1    Uniprot ID   -
Organism   Pseudomonas congelans strain TLP2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431651..443756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS01985 (DBV21_02140) pilM 433820..434884 (+) 1065 WP_003414236.1 pilus assembly protein PilM Machinery gene
  DBV21_RS01990 (DBV21_02145) - 434884..435459 (+) 576 WP_214348702.1 PilN domain-containing protein -
  DBV21_RS01995 (DBV21_02150) pilO 435456..436079 (+) 624 WP_010438765.1 type 4a pilus biogenesis protein PilO -
  DBV21_RS02000 (DBV21_02155) pilP 436076..436603 (+) 528 WP_003350151.1 type 4a pilus biogenesis lipoprotein PilP -
  DBV21_RS02005 (DBV21_02160) pilQ 436651..438756 (+) 2106 WP_010438770.1 type IV pilus secretin PilQ Machinery gene
  DBV21_RS02010 (DBV21_02165) aroK 438761..439279 (+) 519 WP_214348705.1 shikimate kinase AroK -
  DBV21_RS02015 (DBV21_02170) aroB 439395..440498 (+) 1104 WP_010438776.1 3-dehydroquinate synthase -
  DBV21_RS02020 (DBV21_02175) - 440509..442134 (+) 1626 WP_214348709.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 75366.82 Da        Isoelectric Point: 5.0992

>NTDB_id=442254 DBV21_RS02005 WP_010438770.1 436651..438756(+) (pilQ) [Pseudomonas congelans strain TLP2]
MTRILSIIGVSLCIAMLSPVLQAANLKTLDVAALPGDRIELKLAFDAPVPAPRGYTTAQPARIALDLPGVTSQLATKSRD
LGSGNAHSVVVVQAQDRTRVIINLTTLSPYSSRVDGNNLFVVIGQGAAAAQASQPTTAMGAQRVAVPPPTPASAKPFIPA
GVKAIRNVDFQRGELGEGNVVIDLSNPSIAPDIQEQGGKIRVDFAKTQLPEPLRVRLDVKDFATPVQFVSASASGDKASI
LIEPSGAFDYSAFQTENKLTISVRPLTNEDLDRRAADKPVYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGI
TLRLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKLFQS
VTSAESKADERGSITVDDRTNNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVEANVDYNKQLGVRWGGRTNISGTS
NWSAGGLDNRGDEAGNTGNSLGPNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAK
ILKGTEIPYQESSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGET
IVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRIMNNQAISVSR

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=442254 DBV21_RS02005 WP_010438770.1 436651..438756(+) (pilQ) [Pseudomonas congelans strain TLP2]
ATGACCCGGATTCTCTCGATTATCGGCGTGTCGTTATGCATCGCGATGCTGTCGCCGGTTCTCCAGGCTGCCAACCTCAA
GACCCTGGATGTCGCCGCCCTGCCGGGTGACCGCATCGAGCTGAAACTGGCATTCGACGCCCCGGTGCCTGCGCCGCGGG
GCTACACCACGGCGCAACCGGCGCGCATTGCGCTGGACCTGCCGGGTGTTACCAGCCAGCTGGCGACCAAAAGCCGAGAC
CTGGGCAGTGGCAATGCGCACAGTGTCGTCGTGGTACAAGCTCAGGACCGCACTCGGGTGATCATCAACCTGACCACGCT
TTCGCCTTACAGCTCCCGCGTCGATGGCAACAACCTGTTCGTGGTCATCGGCCAGGGTGCCGCCGCTGCGCAAGCCTCCC
AGCCGACCACTGCAATGGGCGCGCAACGGGTCGCGGTACCGCCGCCCACGCCAGCATCCGCCAAGCCGTTTATCCCTGCA
GGCGTCAAGGCCATCAGGAACGTCGACTTCCAGCGTGGCGAGCTGGGTGAGGGCAATGTGGTCATCGACCTGAGCAACCC
CAGCATTGCCCCGGATATCCAGGAGCAGGGCGGCAAGATTCGCGTGGACTTCGCCAAGACCCAGTTGCCCGAACCGCTGC
GCGTCCGGCTGGACGTCAAGGACTTCGCCACGCCGGTGCAGTTCGTCAGTGCTTCGGCGTCGGGTGACAAGGCCAGCATT
CTGATCGAGCCGTCGGGCGCCTTCGATTACTCGGCGTTCCAGACCGAAAACAAGCTGACCATCAGCGTGCGTCCATTGAC
CAACGAGGACCTGGACCGCCGCGCTGCCGACAAGCCGGTGTATACCGGTGAAAAGCTGTCGTTGAACTTCCAGGACATCG
ATGTGCGTTCGGTGCTGCAACTGATTGCCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTCCAGGGCGGTATC
ACGCTGCGTCTGCAGAATGTGCCATGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAGGGGCTGGACAAGCGCAAGGT
CGGCAACGTTCTGCTGGTCGCGCCCGCCGATGAAATTGCCGCCCGCGAACGTCAGGAGCTGGAATCGCTCAAGCAGATCG
CCGAGCTGGCGCCCTTGCGCCGCGAGCTGCTGCAGGTCAATTACGCCAAGGCCGCCGACATCGCCAAGCTGTTCCAGTCC
GTGACCAGCGCCGAATCCAAGGCCGACGAGCGCGGCTCGATCACGGTGGACGACCGGACCAACAACATCATTGCCTACCA
GACCCAGGAGCGACTCGACGAACTGCGTCGTATCGTTTCGCAACTGGACATCCCGGTACGCCAGGTGATGATCGAGGCAC
GCATCGTCGAGGCCAACGTCGATTACAACAAGCAGCTGGGTGTTCGCTGGGGCGGTAGAACCAACATCTCGGGAACCAGT
AACTGGAGCGCGGGAGGCCTGGACAACAGGGGCGACGAGGCCGGCAACACCGGCAACAGCCTGGGGCCGAACATTCCCTT
CGTCGACCTGGGCGCCGCTGATGCGACGACCGGTATCGGCCTCGGTTTCGTGACCAACAACACGCTGCTGGATCTTGAGC
TGAGTGCCATGGAGAAAACCGGTAACGGTGAAATCGTCTCCCAGCCCAAGGTGGTCACTTCCGACAAGGAAACCGCCAAG
ATCCTCAAGGGTACGGAGATCCCGTATCAGGAATCCAGCTCCAGCGGTGCGACGACGGTGAGTTTCAAGGAGGCTTCCCT
GTCGCTTGAAGTGACGCCGCAGATCACGCCCGACAATCGCATCATCATGGAAGTGAAGGTCACCAAGGACGAGCCGGACT
ACCTGAATGCGGTACTGGGCGTACCGCCCATCAAGAAGAACGAGGTCAACGCCAAGGTGCTGATTTCCGACGGCGAAACC
ATCGTCATCGGTGGTGTGTTCTCGAATACGCAAAGTAAAGTTGTCGATAAAGTGCCATTTCTTGGCGATGTACCGTATCT
TGGCCGGCTTTTCAGGCGCGATGTGGTATCCGAGTCCAAATCCGAGCTGTTGGTATTTCTGACTCCGCGTATCATGAACA
ACCAGGCGATTTCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(309-355)

Bacterial type II/III secretion system short domain (Secretin_N)

(383-448)

AMIN domain (AMIN)

(38-122)

Bacterial type II and III secretion system protein (Secretin)

(536-692)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.79

100

0.752
  comQ Acinetobacter baylyi ADP1

42.158

99.144

0.418
  pilQ Acinetobacter baumannii strain A118

38.063

100

0.398
  pilQ Acinetobacter baumannii D1279779

38.063

100

0.398
  pilQ Legionella pneumophila strain ERS1305867

38.978

97.718

0.381
  pilQ Legionella pneumophila strain Lp02

38.686

97.718

0.378