Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IRJ28_RS16695 Genome accession   NZ_CP064096
Coordinates   3162833..3163267 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N1142-3at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3157833..3168267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS16680 epsK 3158462..3159313 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  IRJ28_RS16685 - 3159294..3160382 (-) 1089 WP_003246551.1 lipoprotein -
  IRJ28_RS16690 topB 3160585..3162768 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  IRJ28_RS16695 lrpC 3162833..3163267 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IRJ28_RS16700 ydzA 3163452..3163742 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  IRJ28_RS16705 amj 3163786..3164595 (-) 810 WP_003234394.1 lipid II flippase Amj -
  IRJ28_RS16710 ydaG 3165101..3165523 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  IRJ28_RS16715 ydaF 3165601..3166152 (-) 552 WP_003246691.1 GNAT family protein -
  IRJ28_RS16720 lyxE 3166238..3166741 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IRJ28_RS16725 ydaD 3166757..3167617 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=442250 IRJ28_RS16695 WP_003246585.1 3162833..3163267(-) (lrpC) [Bacillus subtilis strain N1142-3at]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=442250 IRJ28_RS16695 WP_003246585.1 3162833..3163267(-) (lrpC) [Bacillus subtilis strain N1142-3at]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1