Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ28_RS12260 Genome accession   NZ_CP064096
Coordinates   2322331..2323467 (-) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain N1142-3at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2317331..2328467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS12220 xre 2317663..2318004 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  IRJ28_RS12225 xkdA 2318167..2318763 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  IRJ28_RS12230 xpdC 2318807..2319643 (-) 837 WP_003245071.1 manganese catalase family protein -
  IRJ28_RS12235 pghB 2319720..2320322 (-) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  IRJ28_RS12240 yjqA 2320428..2320805 (+) 378 WP_003245254.1 PH domain-containing protein -
  IRJ28_RS12245 xlyB 2320845..2321798 (-) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  IRJ28_RS12250 yjpA 2321919..2322176 (+) 258 WP_003232731.1 YciI family protein -
  IRJ28_RS12255 phrA 2322207..2322341 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  IRJ28_RS12260 rapC 2322331..2323467 (-) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  IRJ28_RS12265 yjoB 2323612..2324883 (-) 1272 WP_003245490.1 ATPase YjoB -
  IRJ28_RS12270 yjoA 2325032..2325496 (+) 465 WP_003245144.1 DinB family protein -
  IRJ28_RS12275 yjnA 2325721..2326485 (+) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  IRJ28_RS12280 uxaA 2326524..2328017 (-) 1494 WP_003245409.1 UxaA family hydrolase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=442215 IRJ28_RS12260 WP_010886491.1 2322331..2323467(-) (rapC) [Bacillus subtilis strain N1142-3at]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=442215 IRJ28_RS12260 WP_010886491.1 2322331..2323467(-) (rapC) [Bacillus subtilis strain N1142-3at]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418