Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ26_RS03830 Genome accession   NZ_CP064094
Coordinates   718457..719587 (-) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis strain N1108-5at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 713457..724587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS03785 cotJC 713560..714129 (-) 570 WP_003233850.1 spore coat protein CotJC -
  IRJ26_RS03790 cotJB 714144..714407 (-) 264 WP_003219491.1 spore coat protein CotJB -
  IRJ26_RS03795 cotJA 714391..714639 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  IRJ26_RS03800 yesF 714766..715626 (-) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  IRJ26_RS03805 yesE 715623..716066 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  IRJ26_RS03810 yezE 716145..716729 (-) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  IRJ26_RS03815 yeeK 716844..717281 (-) 438 WP_003244206.1 spore coat protein YeeK -
  IRJ26_RS03820 yeeI 717415..718134 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IRJ26_RS03825 phrH 718294..718467 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  IRJ26_RS03830 rapC 718457..719587 (-) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  IRJ26_RS03835 - 719749..720771 (-) 1023 WP_003243884.1 hypothetical protein -
  IRJ26_RS03840 yeeF 720983..722992 (+) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  IRJ26_RS03845 yezG 723012..723467 (+) 456 WP_010886434.1 TIGR01741 family protein -
  IRJ26_RS03850 yezA 723707..723913 (+) 207 WP_003233877.1 bacteriocin immunity protein -
  IRJ26_RS03855 - 723980..724285 (+) 306 WP_003242885.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=441852 IRJ26_RS03830 WP_003243267.1 718457..719587(-) (rapC) [Bacillus subtilis strain N1108-5at]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=441852 IRJ26_RS03830 WP_003243267.1 718457..719587(-) (rapC) [Bacillus subtilis strain N1108-5at]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402