Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ24_RS01570 Genome accession   NZ_CP064093
Coordinates   302194..303324 (-) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis strain N1282-4at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 297194..308324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS01525 cotJC 297297..297866 (-) 570 WP_003233850.1 spore coat protein CotJC -
  IRJ24_RS01530 cotJB 297881..298144 (-) 264 WP_003219491.1 spore coat protein CotJB -
  IRJ24_RS01535 cotJA 298128..298376 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  IRJ24_RS01540 yesF 298503..299363 (-) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  IRJ24_RS01545 yesE 299360..299803 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  IRJ24_RS01550 yezE 299882..300466 (-) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  IRJ24_RS01555 yeeK 300581..301018 (-) 438 WP_003244206.1 spore coat protein YeeK -
  IRJ24_RS01560 yeeI 301152..301871 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IRJ24_RS01565 phrH 302031..302204 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  IRJ24_RS01570 rapC 302194..303324 (-) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  IRJ24_RS01575 - 303486..304508 (-) 1023 WP_003243884.1 hypothetical protein -
  IRJ24_RS01580 yeeF 304720..306729 (+) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  IRJ24_RS01585 yezG 306749..307204 (+) 456 WP_010886434.1 TIGR01741 family protein -
  IRJ24_RS01590 yezA 307444..307650 (+) 207 WP_003233877.1 bacteriocin immunity protein -
  IRJ24_RS01595 - 307717..308022 (+) 306 WP_003242885.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=441669 IRJ24_RS01570 WP_003243267.1 302194..303324(-) (rapC) [Bacillus subtilis strain N1282-4at]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=441669 IRJ24_RS01570 WP_003243267.1 302194..303324(-) (rapC) [Bacillus subtilis strain N1282-4at]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402