Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IPZ77_RS09900 Genome accession   NZ_CP064057
Coordinates   2273422..2274039 (+) Length   205 a.a.
NCBI ID   WP_200364916.1    Uniprot ID   -
Organism   Streptomyces sp. XC 2026     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2268422..2279039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ77_RS09880 (IPZ77_09885) - 2269561..2270760 (+) 1200 WP_200364910.1 hypothetical protein -
  IPZ77_RS09885 (IPZ77_09890) msrA 2270775..2271437 (+) 663 WP_200364912.1 peptide-methionine (S)-S-oxide reductase MsrA -
  IPZ77_RS09890 (IPZ77_09895) - 2271579..2272496 (-) 918 WP_234389724.1 hypothetical protein -
  IPZ77_RS09895 (IPZ77_09900) clpP 2272779..2273420 (+) 642 WP_200364914.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPZ77_RS09900 (IPZ77_09905) clpP 2273422..2274039 (+) 618 WP_200364916.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPZ77_RS09905 (IPZ77_09910) - 2274052..2274399 (-) 348 WP_234389725.1 helix-turn-helix transcriptional regulator -
  IPZ77_RS09910 (IPZ77_09915) - 2274481..2275743 (-) 1263 WP_234389726.1 Ig-like domain-containing protein -
  IPZ77_RS09915 (IPZ77_09920) - 2275902..2276231 (-) 330 WP_030728576.1 hypothetical protein -
  IPZ77_RS09920 (IPZ77_09925) - 2276370..2276549 (+) 180 WP_030728578.1 hypothetical protein -
  IPZ77_RS09925 (IPZ77_09930) hutH 2276563..2278131 (-) 1569 WP_200368576.1 histidine ammonia-lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22104.11 Da        Isoelectric Point: 4.8819

>NTDB_id=441480 IPZ77_RS09900 WP_200364916.1 2273422..2274039(+) (clpP) [Streptomyces sp. XC 2026]
MGQYTIPTVVERTPNGERAYDVYSRLLSERVIFLGTEIDDGVANVVIAQLFHLEAEAPEQEISLYINSPGGSFTSLMAIY
DTMSFVTAPVSTFCVGQAASTAGVLLAGGEPGRRVVLEHARVLLGQPASGGRQGMISDLSLEAKEMLRVRSQVEEVLARH
TGHDVAALRADMDRDRVFTAHEAVAYGLADQVLSRRAVPPMSLST

Nucleotide


Download         Length: 618 bp        

>NTDB_id=441480 IPZ77_RS09900 WP_200364916.1 2273422..2274039(+) (clpP) [Streptomyces sp. XC 2026]
ATGGGCCAGTACACGATTCCGACGGTCGTCGAGCGCACCCCGAACGGGGAGCGGGCGTACGACGTCTACAGCCGGCTGCT
GTCCGAGCGGGTCATCTTCCTGGGCACCGAGATCGACGACGGCGTCGCCAACGTCGTCATCGCGCAGCTGTTCCATCTGG
AGGCGGAGGCCCCGGAGCAGGAGATCTCGCTGTACATCAACTCGCCCGGCGGCTCGTTCACTTCGCTGATGGCCATCTAC
GACACCATGAGCTTCGTGACCGCGCCGGTCTCCACGTTCTGCGTGGGGCAGGCCGCGTCCACGGCGGGCGTGCTGCTGGC
GGGCGGGGAGCCGGGGCGGCGGGTGGTGCTGGAGCACGCGCGGGTGCTGCTGGGGCAGCCGGCCAGCGGCGGGCGGCAGG
GGATGATCTCCGATCTGAGCCTGGAGGCCAAGGAGATGCTGCGGGTCCGCTCCCAGGTGGAGGAGGTGCTGGCCCGCCAC
ACCGGGCACGACGTGGCGGCCCTGCGGGCGGACATGGACCGTGACCGGGTGTTCACGGCGCACGAGGCAGTGGCGTACGG
GCTGGCCGATCAGGTGCTCAGCCGGCGGGCGGTGCCGCCGATGTCGCTGAGCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.381

92.195

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.316

92.683

0.429
  clpP Streptococcus pneumoniae D39

38.66

94.634

0.366
  clpP Streptococcus pneumoniae R6

38.66

94.634

0.366
  clpP Streptococcus pneumoniae Rx1

38.66

94.634

0.366
  clpP Streptococcus pneumoniae TIGR4

38.66

94.634

0.366
  clpP Lactococcus lactis subsp. cremoris KW2

38.071

96.098

0.366
  clpP Streptococcus pyogenes JRS4

39.062

93.659

0.366
  clpP Streptococcus pyogenes MGAS315

39.062

93.659

0.366
  clpP Streptococcus mutans UA159

39.153

92.195

0.361