Detailed information NTG0441006

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HIS92_RS19475
• Genome accession: NZ_CP051858
• Coordinates: 3802145..3804745 (+)
• Length: 866 a.a.
• NCBI ID: WP_000365378.1
• Uniprot ID: A0A9W3P241
• Organism: Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3797145..3809745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HIS92_RS19435 (HIS92_19495)	-	3797603..3797866 (+)	264	WP_003260911.1	hypothetical protein	-
HIS92_RS19440 (HIS92_19500)	prsA	3797908..3798765 (-)	858	WP_001214385.1	peptidylprolyl isomerase PrsA	-
HIS92_RS19445 (HIS92_19505)	-	3798895..3799026 (-)	132	WP_001120845.1	DUF3941 domain-containing protein	-
HIS92_RS19450 (HIS92_19510)	-	3799127..3799984 (+)	858	WP_000364431.1	YitT family protein	-
HIS92_RS19455 (HIS92_19515)	-	3800010..3800207 (-)	198	WP_000527409.1	DUF3813 domain-containing protein	-
HIS92_RS19460 (HIS92_19520)	-	3800208..3800348 (-)	141	WP_000516816.1	hypothetical protein	-
HIS92_RS19465 (HIS92_19525)	-	3800454..3801263 (-)	810	WP_001041241.1	Cof-type HAD-IIB family hydrolase	-
HIS92_RS19470 (HIS92_19530)	-	3801754..3801933 (+)	180	WP_000531422.1	YjzC family protein	-
HIS92_RS19475 (HIS92_19535)	clpC	3802145..3804745 (+)	2601	WP_000365378.1	ATP-dependent chaperone ClpB	Regulator
HIS92_RS19480 (HIS92_19540)	-	3804784..3804966 (-)	183	WP_001211948.1	YjzD family protein	-
HIS92_RS19485 (HIS92_19545)	-	3805123..3805857 (+)	735	WP_000028706.1	hypothetical protein	-
HIS92_RS19490 (HIS92_19550)	-	3805887..3806759 (+)	873	WP_000486171.1	NAD(P)-dependent oxidoreductase	-
HIS92_RS19495 (HIS92_19555)	comZ	3806814..3806990 (+)	177	WP_001003335.1	ComZ family protein	Regulator
HIS92_RS19500 (HIS92_19560)	fabH	3807222..3808154 (+)	933	WP_001100533.1	beta-ketoacyl-ACP synthase III	-
HIS92_RS19505 (HIS92_19565)	fabF	3808186..3809424 (+)	1239	WP_000412645.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97512.45 Da
• Isoelectric Point: 5.1561

>NTDB_id=441006 HIS92_RS19475 WP_000365378.1 3802145..3804745(+) (clpC) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYITGALQQLFVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=441006 HIS92_RS19475 WP_000365378.1 3802145..3804745(+) (clpC) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTGCGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAGCAAGGCGCCGAAAGTTTAATTAAGAAAAAGCCTTCTGTAACGGGAAGCGGTGCAGAA
GTAGGCAAATTATATATAACAGGTGCTCTGCAACAACTATTTGTAAGAGCAGGAAAAGAAGCAGAGAAATTGCAAGATGA
CTACATTTCAGTGGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATCAATCAATTATTTACAAGATTTCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCAGAAGTGAGAGCAGGGAAAATTGATCCTGTTATTGGCCGGGA
TAGTGAAATTCGACGTGTCATTCGCATTCTTTCACGTAAAACGAAAAACAACCCTGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGGTTAGCGCAGCGTATTGTGAAAAAAGATGTACCTGAAGGGCTAAAAGATAGAACGATC
TTCGCGTTAGATATGAGTGCGCTCGTAGCTGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGGCGTATTTTATTATTTATTGATGAACTTCATACAATCGTTGGCGCCGGTAAAACAGAAG
GTGCGATGGATGCAGGGAATATGTTAAAACCGATGCTTGCTCGCGGTGAACTACACTGTATTGGGGCGACGACATTAGAT
GAATATCGTAAATATATTGAGAAAGACCCGGCGTTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCATGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCAGTTTTATCAGATCGATATATTTCGGACCGTTTCTTACCAGATAAAGCAATTGATCTTGTCGATGAAGCG
TGTGCAACAATTCGTACAGAAATCGATTCTATGCCGACAGAATTAGATGAAGTAACGCGTCGTATTATGCAGTTAGAAAT
TGAGGAAGCAGCTCTTGGAAAAGAAACAGATCGTGGTAGCCAAGAACGTCTTAAAACGTTGCAACGTGAACTATCAGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCAGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCTAAACTCGTTGAAGGT
GAACGCGAGAAATTACTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTATC
AGACGCGGTTCTTCGTGCTCGCGCCGGTATTAAAGATCCGAACCGCCCGATTGGTTCCTTCATTTTCTTAGGCCCTACGG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATTGATATG
TCTGAGTATATGGAGAAACACGCAGTGTCACGCTTAATTGGTGCACCTCCTGGATATGTAGGATATGAAGAAGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCATATTCCGTTATTTTATTAGATGAAATTGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCGCAAGGACGTACAGTGGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTACTAGATGGATTAGAAGAAGATGGCTCGATTAAAGAGGAATCAAGAGA
CCTTGTAATGGGGCAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTTGATGAAATTATTTTATTTAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGGCGTTTAGCTGACCGTCACATTACA
GTAGAATTAACAGACGCAGCAAAAGAATTTGTTGTAGAAGCTGGCTTTGATCCGATGTATGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCGCGAGAATTAATTGCAGGAACAATTACTGACAATAGTCACGTAGTTG
TCGATGTAGAAAATAACGAATTAGTTGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.657	100	0.482
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.039	100	0.424
clpC	Lactococcus lactis subsp. cremoris KW2	47.199	82.448	0.389