Detailed information NTG0439426

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HF916_RS29780
• Genome accession: NZ_CP051516
• Coordinates: 381730..382905 (-)
• Length: 391 a.a.
• NCBI ID: WP_168792488.1
• Uniprot ID: -
• Organism: Paraburkholderia aromaticivorans strain AR20-38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 376730..387905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF916_RS29755	-	376958..377341 (+)	384	WP_168792483.1	nuclear transport factor 2 family protein	-
HF916_RS29760	-	377534..378571 (-)	1038	Protein_345	2-isopropylmalate synthase	-
HF916_RS29765	ybiB	379071..380042 (-)	972	WP_168792485.1	DNA-binding protein YbiB	-
HF916_RS29770	-	380269..380967 (+)	699	WP_168792486.1	fumarylacetoacetate hydrolase family protein	-
HF916_RS29775	maiA	380993..381637 (+)	645	WP_168792487.1	maleylacetoacetate isomerase	-
HF916_RS29780	pilA	381730..382905 (-)	1176	WP_168792488.1	signal recognition particle-docking protein FtsY	Machinery gene
HF916_RS29785	rsmD	383147..383761 (+)	615	WP_168792489.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HF916_RS29790	coaD	383874..384389 (+)	516	WP_012431643.1	pantetheine-phosphate adenylyltransferase	-
HF916_RS29795	-	384453..384710 (+)	258	WP_168792490.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HF916_RS29800	hisC	384786..385865 (-)	1080	WP_168792491.1	histidinol-phosphate transaminase	-
HF916_RS29805	pth	386024..386626 (-)	603	WP_168792492.1	aminoacyl-tRNA hydrolase	-
HF916_RS29810	-	386777..387400 (-)	624	WP_168792493.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 41517.54 Da
• Isoelectric Point: 4.8309

>NTDB_id=439426 HF916_RS29780 WP_168792488.1 381730..382905(-) (pilA) [Paraburkholderia aromaticivorans strain AR20-38]
MFSFFKRFKGSKESDNAPEESQTAPEGSTPDAAVEAPAPVAPTAPRPAAASVRVETPPVAAPSAIEPEPEPAAFALEETV
EVVPPPLQDAGAKRSWLTRLKTGLSKTSSNLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRTERLAD
PQQVKTALRTLLVDLLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIW
GQRNNVTVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTG
QNALAQVKSFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG

Nucleotide

• Length: 1176 bp

>NTDB_id=439426 HF916_RS29780 WP_168792488.1 381730..382905(-) (pilA) [Paraburkholderia aromaticivorans strain AR20-38]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAGTCGCAAACAGCGCCAGAAGG
CTCGACGCCAGACGCCGCCGTGGAGGCGCCTGCGCCCGTCGCACCGACCGCGCCACGCCCGGCCGCTGCTTCGGTTCGCG
TCGAGACGCCGCCCGTGGCCGCTCCGTCGGCAATCGAGCCCGAACCCGAGCCGGCAGCATTCGCGCTCGAAGAAACCGTC
GAAGTCGTCCCGCCGCCGCTGCAAGACGCGGGCGCGAAGCGTTCGTGGCTGACGCGTCTGAAGACCGGCTTGTCGAAGAC
GAGTTCGAACCTGACCGGGATTTTCGTCGGCACGAAGATCGACGAGGACTTGTACGAAGAGCTCGAAACCGCGCTGCTGA
TGTCGGACGCGGGCGTCGACGCCACCGAATTCCTGCTCGAAGCGCTGCGCGAAAAAGTGCGCACCGAGCGCCTCGCCGAT
CCGCAGCAGGTCAAAACGGCACTGCGCACCCTGCTGGTCGACCTGCTCAAGCCGCTGGAAAAATCGCTCATGCTCGGCCG
CGCGCAGCCGCTCGTGATGATGATCGCCGGCGTCAACGGCGCGGGCAAAACCACCAGCATCGGCAAGCTCGCCAAGCATC
TGCAGAGTTTCGATCAGTCGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTGGCCATCTGG
GGCCAGCGCAACAACGTAACCGTGGTCTCGCAGGAAAGCGGCGACCCGGCGGCGGTGATCTTCGACGCGGTCGGCGCAGC
GCGTGCGCGCAAGATCGACGTGATGATGGCGGACACGGCCGGCCGCCTGCCGACCCAACTGCATCTCATGGAAGAACTGC
GCAAGGTGAAGCGCGTGATCGGCAAGGCGCAAGACGGCGCGCCGCACGAGGTGCTACTGGTGATCGACGCCAACACCGGC
CAGAACGCGCTCGCGCAAGTGAAGTCTTTCGACGACGCGCTCGGCCTCACCGGCCTGATCGTCACCAAACTCGACGGCAC
GGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGGCAGCGTCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTCG
AGGACTTGCAGCCGTTCAGCGCGGAAGAGTTTTCCGACGCGTTGCTGGGCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (110-169)

• SRP54-type protein, GTPase domain (SRP54) (191-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.095	100	0.57