Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   IPV42_RS24485 Genome accession   NZ_CP063392
Coordinates   5300421..5300885 (-) Length   154 a.a.
NCBI ID   WP_023086642.1    Uniprot ID   Q8KQ34
Organism   Pseudomonas aeruginosa strain ST167_d68blood1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5295421..5305885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV42_RS24470 (IPV42_24470) nadC 5297921..5298769 (+) 849 WP_003104915.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IPV42_RS24480 (IPV42_24480) - 5298950..5300263 (-) 1314 WP_223218619.1 O-antigen ligase family protein -
  IPV42_RS24485 (IPV42_24485) pilA/pilAI 5300421..5300885 (-) 465 WP_023086642.1 pilin Machinery gene
  IPV42_RS24490 (IPV42_24490) pilB 5301116..5302816 (+) 1701 WP_034076731.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IPV42_RS24495 (IPV42_24495) pilC 5302820..5304037 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  IPV42_RS24500 (IPV42_24500) pilD 5304038..5304910 (+) 873 WP_023084740.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  IPV42_RS24505 (IPV42_24505) coaE 5304907..5305518 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  IPV42_RS24510 (IPV42_24510) yacG 5305515..5305715 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16021.32 Da        Isoelectric Point: 8.9987

>NTDB_id=438954 IPV42_RS24485 WP_023086642.1 5300421..5300885(-) (pilA/pilAI) [Pseudomonas aeruginosa strain ST167_d68blood1]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGSGKGQIKIDKADTATPEISGTLGGSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=438954 IPV42_RS24485 WP_023086642.1 5300421..5300885(-) (pilA/pilAI) [Pseudomonas aeruginosa strain ST167_d68blood1]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTAGCCGCCATTGCCAT
CCCGCAATATCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACTGGTAGCGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCGGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8KQ34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.161

100

0.455
  pilA Acinetobacter baumannii strain A118

46.207

94.156

0.435
  pilA Pseudomonas aeruginosa PAK

41.772

100

0.429
  pilA Ralstonia pseudosolanacearum GMI1000

36.471

100

0.403
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.073

98.052

0.383
  pilA Vibrio cholerae strain A1552

39.073

98.052

0.383
  pilA Vibrio cholerae C6706

39.073

98.052

0.383
  pilA2 Legionella pneumophila strain ERS1305867

38.514

96.104

0.37
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.255

96.753

0.37
  pilA2 Legionella pneumophila str. Paris

37.838

96.104

0.364