Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IPV48_RS28355 Genome accession   NZ_CP063386
Coordinates   6091761..6092285 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain ST1076_d118limb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6086761..6097285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV48_RS28340 (IPV48_28320) aroB 6087877..6088983 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  IPV48_RS28345 (IPV48_28325) aroK 6089033..6089551 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IPV48_RS28350 (IPV48_28330) pilQ 6089563..6091707 (-) 2145 WP_031686163.1 type 4a pilus secretin PilQ Machinery gene
  IPV48_RS28355 (IPV48_28335) comL/pilP 6091761..6092285 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IPV48_RS28360 (IPV48_28340) pilO 6092282..6092905 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IPV48_RS28365 (IPV48_28345) pilN 6092902..6093498 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IPV48_RS28370 (IPV48_28350) pilM 6093498..6094562 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IPV48_RS28375 (IPV48_28355) - 6094747..6097218 (+) 2472 WP_031686164.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=438354 IPV48_RS28355 WP_003095836.1 6091761..6092285(-) (comL/pilP) [Pseudomonas aeruginosa strain ST1076_d118limb1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=438354 IPV48_RS28355 WP_003095836.1 6091761..6092285(-) (comL/pilP) [Pseudomonas aeruginosa strain ST1076_d118limb1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGTGGCGGTTCCGATTTCGCCGACCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTTGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362