Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IM723_RS09680 Genome accession   NZ_CP063275
Coordinates   1865186..1866286 (+) Length   366 a.a.
NCBI ID   WP_002947786.1    Uniprot ID   Q5LXI7
Organism   Streptococcus thermophilus strain DMST-H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1860186..1871286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS09655 pgsA 1860728..1861270 (-) 543 WP_002947777.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IM723_RS09660 - 1861283..1862140 (-) 858 WP_002947779.1 helix-turn-helix domain-containing protein -
  IM723_RS09665 - 1862199..1863476 (-) 1278 WP_211836911.1 pitrilysin family protein -
  IM723_RS09670 - 1863478..1864728 (-) 1251 WP_180477205.1 pitrilysin family protein -
  IM723_RS09675 yaaA 1864806..1865183 (+) 378 WP_002947785.1 S4 domain-containing protein YaaA -
  IM723_RS09680 recF 1865186..1866286 (+) 1101 WP_002947786.1 DNA replication/repair protein RecF Machinery gene
  IM723_RS09685 guaB 1866455..1867936 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  IM723_RS09690 trpS 1868113..1869135 (-) 1023 WP_002952292.1 tryptophan--tRNA ligase -
  IM723_RS09695 - 1869563..1870435 (+) 873 WP_011227628.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42173.29 Da        Isoelectric Point: 8.3913

>NTDB_id=437800 IM723_RS09680 WP_002947786.1 1865186..1866286(+) (recF) [Streptococcus thermophilus strain DMST-H2]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=437800 IM723_RS09680 WP_002947786.1 1865186..1866286(+) (recF) [Streptococcus thermophilus strain DMST-H2]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432