Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IM720_RS09735 Genome accession   NZ_CP063233
Coordinates   2148431..2148763 (+) Length   110 a.a.
NCBI ID   WP_069075532.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain KF1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143431..2153763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS09720 (IM720_09720) - 2144189..2145157 (+) 969 WP_069075530.1 UDP-glucose 4-epimerase family protein -
  IM720_RS09725 (IM720_09725) - 2145195..2146214 (+) 1020 WP_069075531.1 MraY family glycosyltransferase -
  IM720_RS09730 (IM720_09730) - 2146327..2148321 (+) 1995 WP_069077375.1 polysaccharide biosynthesis protein -
  IM720_RS09735 (IM720_09735) comEA/comE1 2148431..2148763 (+) 333 WP_069075532.1 ComEA family DNA-binding protein Machinery gene
  IM720_RS09740 (IM720_09740) - 2148778..2149356 (-) 579 WP_024074177.1 TetR/AcrR family transcriptional regulator -
  IM720_RS09745 (IM720_09745) - 2149491..2150135 (+) 645 WP_193690355.1 GntR family transcriptional regulator -
  IM720_RS09750 (IM720_09750) - 2150151..2150999 (+) 849 WP_150055074.1 urea carboxylase-associated family protein -
  IM720_RS09755 (IM720_09755) - 2151008..2151175 (-) 168 WP_012722955.1 DUF2897 family protein -
  IM720_RS09760 (IM720_09760) eat 2151287..2152651 (-) 1365 WP_024074180.1 ethanolamine permease -
  IM720_RS09765 (IM720_09765) kdpF 2153057..2153146 (+) 90 WP_003218754.1 K(+)-transporting ATPase subunit F -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11829.74 Da        Isoelectric Point: 8.5180

>NTDB_id=437637 IM720_RS09735 WP_069075532.1 2148431..2148763(+) (comEA/comE1) [Pseudomonas fluorescens strain KF1]
MQNIYLTSLIFAFLTTLSVTTTAAPSIKPEPPTPMAAQMVQVEQAAKVNLNAADAETLRRDLFGIGAAKAKAIIAYRESN
GPFAAVDELLEVKGIGKALLEKNRERLSIN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=437637 IM720_RS09735 WP_069075532.1 2148431..2148763(+) (comEA/comE1) [Pseudomonas fluorescens strain KF1]
ATGCAAAATATCTACCTTACTTCCCTAATCTTCGCCTTCCTCACCACGCTCTCCGTCACCACCACCGCTGCCCCGTCGAT
CAAACCCGAACCCCCAACCCCCATGGCGGCGCAGATGGTGCAGGTCGAGCAAGCCGCCAAGGTCAACCTGAATGCCGCCG
ACGCCGAAACCCTGCGTCGTGATCTCTTCGGCATCGGTGCCGCCAAGGCCAAGGCGATCATTGCCTACCGCGAAAGCAAC
GGGCCGTTCGCGGCGGTGGATGAGTTACTGGAGGTAAAGGGCATCGGCAAGGCGCTGTTGGAGAAGAACCGCGAGAGGCT
CTCGATCAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

44.954

99.091

0.445
  comE1/comEA Haemophilus influenzae Rd KW20

44.681

85.455

0.382