Detailed information NTG0437205

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: IMZ18_RS05190
• Genome accession: NZ_CP063151
• Coordinates: 977933..979060 (+)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain CMIN-4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 972933..984060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMZ18_RS05160 (IMZ18_05160)	-	973090..973602 (-)	513	WP_014477426.1	hypothetical protein	-
IMZ18_RS05165 (IMZ18_05165)	cdiI	973674..974033 (-)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
IMZ18_RS05170 (IMZ18_05170)	-	974130..974582 (-)	453	WP_014480333.1	SMI1/KNR4 family protein	-
IMZ18_RS05175 (IMZ18_05175)	-	974681..975121 (-)	441	WP_014480332.1	SMI1/KNR4 family protein	-
IMZ18_RS05180 (IMZ18_05180)	-	975524..975811 (-)	288	WP_014480331.1	hypothetical protein	-
IMZ18_RS22755 (IMZ18_05185)	-	975825..977751 (-)	1927	Protein_1015	T7SS effector LXG polymorphic toxin	-
IMZ18_RS05190 (IMZ18_05190)	rapC	977933..979060 (+)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
IMZ18_RS05195 (IMZ18_05195)	-	979800..980195 (-)	396	WP_014480327.1	VOC family protein	-
IMZ18_RS05200 (IMZ18_05200)	-	981137..982027 (-)	891	WP_014480326.1	LysR family transcriptional regulator	-
IMZ18_RS05205 (IMZ18_05205)	fumC	982194..983582 (+)	1389	WP_014480325.1	class II fumarate hydratase	-
IMZ18_RS22445	-	983801..984013 (+)	213	Protein_1020	recombinase family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=437205 IMZ18_RS05190 WP_014480328.1 977933..979060(+) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=437205 IMZ18_RS05190 WP_014480328.1 977933..979060(+) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397