Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   IL989_RS10725 Genome accession   NZ_CP062984
Coordinates   2233174..2234664 (-) Length   496 a.a.
NCBI ID   WP_193350363.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228174..2239664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS10695 (IL989_10695) gudB 2228249..2229523 (-) 1275 WP_013352705.1 NAD-specific glutamate dehydrogenase -
  IL989_RS10700 (IL989_10700) - 2229685..2230269 (-) 585 WP_013352706.1 genetic competence negative regulator -
  IL989_RS10705 (IL989_10705) - 2230421..2231209 (-) 789 WP_193350360.1 metallophosphoesterase -
  IL989_RS10710 (IL989_10710) - 2231296..2231754 (-) 459 WP_013352708.1 YpbF family protein -
  IL989_RS10715 (IL989_10715) - 2231818..2232594 (-) 777 WP_193350361.1 LysM peptidoglycan-binding domain-containing protein -
  IL989_RS10720 (IL989_10720) - 2232572..2233159 (-) 588 WP_193350362.1 CPBP family intramembrane glutamic endopeptidase -
  IL989_RS10725 (IL989_10725) recS 2233174..2234664 (-) 1491 WP_193350363.1 ATP-dependent DNA helicase RecQ Machinery gene
  IL989_RS10730 (IL989_10730) - 2234657..2235715 (-) 1059 WP_065522844.1 helix-turn-helix domain-containing protein -
  IL989_RS10735 (IL989_10735) - 2235985..2236233 (+) 249 WP_003153403.1 ferredoxin -
  IL989_RS10740 (IL989_10740) - 2236372..2237004 (-) 633 WP_076983238.1 ECF transporter S component -
  IL989_RS10745 (IL989_10745) serA 2237434..2239011 (+) 1578 WP_193350364.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55955.99 Da        Isoelectric Point: 6.0757

>NTDB_id=435949 IL989_RS10725 WP_193350363.1 2233174..2234664(-) (recS) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVADVLGLEHAVRHLYSVNRPNILLAVEHVADNAEKISRITELAEKLEGPGIVYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSGYDLEGILAVIRDAGTSDERKLRDVLISKGVQETQARTAIHLYLQGKTT
KEQLQEELTCRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPESQTGQCCSSCGIDLAPYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=435949 IL989_RS10725 WP_193350363.1 2233174..2234664(-) (recS) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTCTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAGAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAGGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTATCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCTCTCTCGTCACCTTATGTGCTGAACCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGGCAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCGACAGCGACGAAAGAAACGCTCAGGGATGTGGCGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGGTTGAACATGTGGCTGATAATG
CCGAAAAAATCAGCAGGATCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGCGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGAAGCCCGAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGGTTACGACCTGGAAGGCATTCTGGCCGTCATACGGGACGCCGGTACGAGCGATGAGCGAAAGCTTC
GGGATGTTCTGATAAGCAAGGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCACT
AAAGAGCAGCTGCAGGAAGAACTGACATGCCGCGTGGAAAAGAAGCTGCATAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAAGTCAAACCGGGCAATGCT
GCAGCAGCTGCGGAATTGATCTGGCCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.355

100

0.694