Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   G4G26_RS08530 Genome accession   NZ_CP049924
Coordinates   1647468..1648247 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain So1b     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642468..1653247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS08510 (G4G26_08545) trmFO 1643161..1644468 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  G4G26_RS08515 (G4G26_08550) xerC 1644536..1645450 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  G4G26_RS08520 (G4G26_08555) clpQ 1645463..1646008 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  G4G26_RS08525 (G4G26_08560) hslU 1646016..1647428 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  G4G26_RS08530 (G4G26_08565) codY 1647468..1648247 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  G4G26_RS08535 (G4G26_08570) flgB 1648627..1649016 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  G4G26_RS08540 (G4G26_08575) flgC 1649016..1649468 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  G4G26_RS08545 (G4G26_08580) fliE 1649479..1649799 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  G4G26_RS08550 (G4G26_08585) fliF 1649845..1651455 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  G4G26_RS08555 (G4G26_08590) fliG 1651468..1652484 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  G4G26_RS08560 (G4G26_08595) fliH 1652477..1653229 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=428727 G4G26_RS08530 WP_003220850.1 1647468..1648247(+) (codY) [Bacillus subtilis strain So1b]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=428727 G4G26_RS08530 WP_003220850.1 1647468..1648247(+) (codY) [Bacillus subtilis strain So1b]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAATTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467