Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GYO_RS38045 Genome accession   NC_016047
Coordinates   3194765..3195409 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3189765..3200409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS38010 (GYO_3451) - 3190960..3191391 (+) 432 WP_014114977.1 Na(+)/H(+) antiporter subunit B -
  GYO_RS38015 (GYO_3452) - 3191391..3191732 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GYO_RS38020 (GYO_3453) - 3191725..3193206 (+) 1482 WP_041521055.1 Na+/H+ antiporter subunit D -
  GYO_RS38025 (GYO_3454) - 3193212..3193688 (+) 477 WP_014114979.1 Na+/H+ antiporter subunit E -
  GYO_RS38030 (GYO_3455) - 3193688..3193972 (+) 285 WP_014114980.1 Na(+)/H(+) antiporter subunit F1 -
  GYO_RS38035 (GYO_3456) mnhG 3193956..3194330 (+) 375 WP_014114981.1 monovalent cation/H(+) antiporter subunit G -
  GYO_RS38040 (GYO_3457) - 3194369..3194749 (-) 381 WP_003220719.1 hotdog fold thioesterase -
  GYO_RS38045 (GYO_3458) comA 3194765..3195409 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GYO_RS38050 (GYO_3459) comP 3195490..3197802 (-) 2313 WP_014114982.1 histidine kinase Regulator
  GYO_RS38055 (GYO_3460) comX 3197818..3198039 (-) 222 WP_014114983.1 competence pheromone ComX -
  GYO_RS38060 (GYO_3461) - 3198036..3198905 (-) 870 WP_014114984.1 polyprenyl synthetase family protein -
  GYO_RS38065 (GYO_3462) degQ 3199090..3199230 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GYO_RS43830 (GYO_3463) - 3199452..3199577 (+) 126 WP_014114985.1 hypothetical protein -
  GYO_RS38070 (GYO_3464) - 3199692..3200060 (+) 369 WP_014114986.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=42610 GYO_RS38045 WP_003220716.1 3194765..3195409(-) (comA) [Bacillus spizizenii TU-B-10]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=42610 GYO_RS38045 WP_003220716.1 3194765..3195409(-) (comA) [Bacillus spizizenii TU-B-10]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment