Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVT01_RS06385 Genome accession   NZ_CP049266
Coordinates   1290073..1290843 (-) Length   256 a.a.
NCBI ID   WP_107713938.1    Uniprot ID   A0A7S9RHY5
Organism   Campylobacter concisus strain P1CDO3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1285073..1295843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT01_RS06355 (CVT01_06355) hemW 1285625..1286671 (+) 1047 WP_103621204.1 radical SAM family heme chaperone HemW -
  CVT01_RS06360 (CVT01_06360) tatB 1286739..1287137 (+) 399 WP_012140063.1 Sec-independent protein translocase protein TatB -
  CVT01_RS06365 (CVT01_06365) tatC 1287137..1287892 (+) 756 WP_021092305.1 twin-arginine translocase subunit TatC -
  CVT01_RS06370 (CVT01_06370) queA 1287885..1288907 (+) 1023 WP_103621213.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT01_RS06375 (CVT01_06375) - 1288904..1289698 (+) 795 WP_107713940.1 hypothetical protein -
  CVT01_RS06380 (CVT01_06380) ruvX 1289693..1290076 (-) 384 WP_107713939.1 Holliday junction resolvase RuvX -
  CVT01_RS06385 (CVT01_06385) dprA 1290073..1290843 (-) 771 WP_107713938.1 DNA-processing protein DprA Machinery gene
  CVT01_RS06390 (CVT01_06390) - 1290840..1292288 (-) 1449 WP_107713937.1 divergent polysaccharide deacetylase family protein -
  CVT01_RS06395 (CVT01_06395) ilvC 1292292..1293314 (-) 1023 WP_103559128.1 ketol-acid reductoisomerase -
  CVT01_RS06400 (CVT01_06400) - 1293462..1294280 (+) 819 WP_103567760.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27892.35 Da        Isoelectric Point: 6.0551

>NTDB_id=425784 CVT01_RS06385 WP_107713938.1 1290073..1290843(-) (dprA) [Campylobacter concisus strain P1CDO3]
MKLEIIPEALNRLKNPPKELNFIGDTSLLSMPKVAVVGSRKASVYTKECVTALCAALKSANVCVVSGGAIGVDITAHKAA
MPRTIGVFANGLDIIYPAQNRASIKEIYEKGLAISEYDEGEPPIAYRFLERNRIVVGLAQALVVAQADLRSGSMQSARLA
NELKIPLFVLPQRINESNGTNALLASKKAELIDDYVKFVSLFGEVKEQEKTSDEILKFCKNGVSLDEALSKFGEIIYEYE
LDGLVEISNLRVKSAL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=425784 CVT01_RS06385 WP_107713938.1 1290073..1290843(-) (dprA) [Campylobacter concisus strain P1CDO3]
ATGAAGCTTGAAATCATCCCAGAGGCGCTAAATAGGCTAAAAAATCCCCCAAAAGAGCTAAATTTCATAGGCGATACTTC
GCTTCTTAGCATGCCAAAAGTAGCAGTCGTTGGCTCAAGAAAGGCAAGTGTCTATACAAAAGAGTGCGTCACAGCACTTT
GTGCAGCGCTAAAAAGTGCAAATGTCTGCGTGGTGAGCGGTGGGGCTATCGGTGTGGATATCACAGCTCATAAAGCCGCC
ATGCCACGAACTATCGGTGTTTTTGCAAATGGACTTGACATCATCTATCCAGCTCAAAATAGGGCGTCGATAAAAGAAAT
TTATGAAAAAGGCTTGGCTATAAGCGAGTATGACGAGGGTGAGCCGCCGATCGCTTATAGGTTTTTAGAGCGAAACCGCA
TAGTTGTGGGGCTTGCACAAGCCCTGGTTGTCGCTCAGGCTGATCTAAGAAGCGGCTCGATGCAAAGCGCAAGACTTGCA
AATGAGCTTAAAATCCCTCTCTTTGTCCTGCCGCAGCGCATAAATGAGAGCAATGGAACAAATGCCTTGCTAGCTAGCAA
AAAGGCCGAGCTTATCGATGATTACGTTAAATTTGTCTCGCTTTTTGGTGAGGTAAAAGAGCAAGAAAAAACAAGCGATG
AGATCTTGAAATTTTGCAAAAATGGCGTTAGCCTTGATGAAGCATTGTCTAAATTTGGCGAGATCATCTACGAGTACGAG
CTTGATGGGCTAGTTGAAATTTCAAATTTAAGAGTAAAAAGCGCGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9RHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.223

91.016

0.512
  dprA Helicobacter pylori 26695

45.02

98.047

0.441