Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   G4P54_RS08840 Genome accession   NZ_CP048852
Coordinates   1670836..1672086 (+) Length   416 a.a.
NCBI ID   WP_167872390.1    Uniprot ID   -
Organism   Bacillus tequilensis strain EA-CB0015     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1665836..1677086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS08810 (G4P54_08785) yfmH 1665932..1667218 (+) 1287 WP_167872385.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  G4P54_RS08815 (G4P54_08790) ymfI 1667272..1668000 (+) 729 WP_167872386.1 elongation factor P 5-aminopentanone reductase -
  G4P54_RS08820 (G4P54_08795) - 1668081..1668338 (+) 258 WP_024715997.1 DUF3243 domain-containing protein -
  G4P54_RS08825 (G4P54_08800) - 1668468..1669259 (+) 792 WP_167872387.1 DUF3388 domain-containing protein -
  G4P54_RS08830 (G4P54_08805) rodZ 1669278..1670186 (+) 909 WP_167872388.1 cell shape determination protein RodZ -
  G4P54_RS08835 (G4P54_08810) pgsA 1670236..1670817 (+) 582 WP_167872389.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G4P54_RS08840 (G4P54_08815) cinA 1670836..1672086 (+) 1251 WP_167872390.1 competence/damage-inducible protein A Machinery gene
  G4P54_RS08845 (G4P54_08820) recA 1672258..1673304 (+) 1047 WP_024715994.1 recombinase RecA Machinery gene
  G4P54_RS08850 (G4P54_08825) - 1673473..1674648 (+) 1176 WP_024715993.1 serine hydrolase domain-containing protein -
  G4P54_RS08855 (G4P54_08830) rny 1674923..1676485 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45427.73 Da        Isoelectric Point: 5.0677

>NTDB_id=423559 G4P54_RS08840 WP_167872390.1 1670836..1672086(+) (cinA) [Bacillus tequilensis strain EA-CB0015]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLALNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLIEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVTELSKACKEKGITISAAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGIAANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=423559 G4P54_RS08840 WP_167872390.1 1670836..1672086(+) (cinA) [Bacillus tequilensis strain EA-CB0015]
ATGGAATTTCCAAAGAAAGCTGAAATTATTGCAGTCGGTTCAGAGCTGTTACTCGGCCAGATCGCCAATACAAATGCTCA
ATTTATTAGTAAAGAGCTGGCTGAAATCGGCGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGAGCGGTTGA
AGCAGGTTATCCGCATCGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGGCCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGCGCTCGGACGTCCGCTTGCGTTAAATGATGAGGCATTCCAATCCATAGAAGATTATTT
CAAACGAACAAAACGCACGATGTCGCCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGATGTATTGGCGAATC
ACTTTGGAATGGCACCGGGAATGCTCATCGAGCATGAATCCCGTTTTTATATGCTTCTCCCTGGACCGCCAAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTATCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCTGATTTGGAAGATATTATTGATGCGCAAACCAACCCGACAATCG
CTCCTTTGGCGGCCGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTG
AAAGAAACAGAGGCCGTTATCTTAGAACGTGTCGGTGAATTTTTCTATGGATACGACGATACTTCTCTTGTAACAGAGCT
CTCTAAAGCATGTAAGGAAAAAGGCATTACGATTTCCGCGGCGGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGTGTGGTTTGCTATACAAACGACGTAAAGCAGAACGTGCTGGGC
GTCAAGAAGGAAACATTAGATCGATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGCGTTCAAAAGCT
CACGGGCAGCGATATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGACATGAACCTGGGCATGTGT
TTATCGGCATTGCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGTTCCAGAACGGGAATCAGAAAACGC
GGCGCTAAATACGGCTGTCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.356

100

0.974
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus mutans UA159

45.521

99.279

0.452
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375