Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GN234_RS22855 | Genome accession | NZ_CP048810 |
| Coordinates | 5188778..5189647 (-) | Length | 289 a.a. |
| NCBI ID | WP_176689119.1 | Uniprot ID | A0A6N1CIK3 |
| Organism | Pseudomonas bijieensis strain L22-9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5183778..5194647
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN234_RS22815 (GN234_22740) | - | 5184109..5185407 (-) | 1299 | WP_176689118.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| GN234_RS22820 (GN234_22745) | - | 5185468..5185641 (-) | 174 | WP_003185543.1 | DUF3094 domain-containing protein | - |
| GN234_RS22825 (GN234_22750) | - | 5185694..5186221 (-) | 528 | WP_116833475.1 | MOSC domain-containing protein | - |
| GN234_RS22830 (GN234_22755) | - | 5186218..5186844 (-) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| GN234_RS22835 (GN234_22760) | - | 5186990..5187676 (+) | 687 | WP_116833474.1 | energy-coupling factor ABC transporter permease | - |
| GN234_RS22840 (GN234_22765) | - | 5187740..5187955 (+) | 216 | WP_013694234.1 | hypothetical protein | - |
| GN234_RS22845 (GN234_22770) | yacG | 5187952..5188158 (-) | 207 | WP_109756364.1 | DNA gyrase inhibitor YacG | - |
| GN234_RS22850 (GN234_22775) | coaE | 5188155..5188778 (-) | 624 | WP_163856593.1 | dephospho-CoA kinase | - |
| GN234_RS22855 (GN234_22780) | pilD | 5188778..5189647 (-) | 870 | WP_176689119.1 | prepilin peptidase | Machinery gene |
| GN234_RS22860 (GN234_22785) | pilC | 5189649..5190866 (-) | 1218 | WP_109756361.1 | type II secretion system F family protein | Machinery gene |
| GN234_RS22865 (GN234_22790) | pilB | 5190869..5192569 (-) | 1701 | WP_109756360.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GN234_RS22870 (GN234_22795) | - | 5192794..5193213 (+) | 420 | WP_134925863.1 | pilin | - |
| GN234_RS22875 (GN234_22800) | - | 5193495..5193848 (+) | 354 | WP_109756359.1 | BON domain-containing protein | - |
| GN234_RS22880 (GN234_22805) | - | 5194160..5194456 (-) | 297 | WP_176689120.1 | DUF2845 domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31825.95 Da Isoelectric Point: 7.3459
>NTDB_id=423170 GN234_RS22855 WP_176689119.1 5188778..5189647(-) (pilD) [Pseudomonas bijieensis strain L22-9]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPIYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLGGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPIYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLGGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=423170 GN234_RS22855 WP_176689119.1 5188778..5189647(-) (pilD) [Pseudomonas bijieensis strain L22-9]
ATGCCCCTGAGCGAATTCTTCGTGCTATATCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGATCTGCTGGGCC
TGCCGGCTGAAACCCCGGGCCCGATCTATAACCTGATGCTGCCCCATTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGGGCGGTCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAACTGGCCTGCGGCGCGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCGA
TGGTGATGGTGTTGTCCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTATTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGTTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGCTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGGGATGCCCCTGGGTCGACACAGATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTCTTCGTGCTATATCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGATCTGCTGGGCC
TGCCGGCTGAAACCCCGGGCCCGATCTATAACCTGATGCTGCCCCATTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGGGCGGTCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAACTGGCCTGCGGCGCGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCGA
TGGTGATGGTGTTGTCCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTATTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGTTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGCTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGGGATGCCCCTGGGTCGACACAGATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio campbellii strain DS40M4 |
50.175 |
98.616 |
0.495 |
| pilD | Acinetobacter baumannii D1279779 |
47.703 |
97.924 |
0.467 |
| pilD | Acinetobacter nosocomialis M2 |
47.687 |
97.232 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
99.308 |
0.464 |