Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   IAU66_RS07850 Genome accession   NZ_CP061168
Coordinates   1568794..1569243 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain T-5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563794..1574243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS07810 ctaE 1563924..1564547 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  IAU66_RS07815 ctaF 1564550..1564882 (+) 333 WP_003154481.1 cytochrome c oxidase subunit IVB -
  IAU66_RS07820 ctaG 1564907..1565791 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  IAU66_RS07825 - 1565825..1566184 (-) 360 WP_003154479.1 YugN family protein -
  IAU66_RS07830 - 1566325..1566768 (+) 444 WP_003154478.1 CBS domain-containing protein -
  IAU66_RS07835 - 1566853..1567893 (+) 1041 WP_003154477.1 CAP domain-containing protein -
  IAU66_RS07840 - 1568058..1568468 (+) 411 WP_014304959.1 YlbD family protein -
  IAU66_RS07845 - 1568484..1568723 (+) 240 WP_003154475.1 YlbE-like family protein -
  IAU66_RS07850 ylbF 1568794..1569243 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  IAU66_RS07855 - 1569302..1569574 (+) 273 WP_003154470.1 YlbG family protein -
  IAU66_RS07860 - 1569665..1569874 (+) 210 WP_015388275.1 hypothetical protein -
  IAU66_RS07865 rsmD 1569874..1570428 (+) 555 WP_032856757.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IAU66_RS07870 coaD 1570433..1570915 (+) 483 WP_024085272.1 pantetheine-phosphate adenylyltransferase -
  IAU66_RS07875 ylbJ 1570934..1572160 (-) 1227 WP_024085273.1 sporulation integral membrane protein YlbJ -
  IAU66_RS07880 - 1572340..1573119 (+) 780 WP_014304961.1 patatin family protein -
  IAU66_RS07885 sepM 1573125..1574147 (+) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=420645 IAU66_RS07850 WP_003154472.1 1568794..1569243(+) (ylbF) [Bacillus amyloliquefaciens strain T-5]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=420645 IAU66_RS07850 WP_003154472.1 1568794..1569243(+) (ylbF) [Bacillus amyloliquefaciens strain T-5]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879