Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GYN04_RS00490 Genome accession   NZ_CP048254
Coordinates   105107..105652 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100107..110652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS00480 (GYN04_00475) - 101113..101625 (-) 513 WP_003687349.1 shikimate kinase -
  GYN04_RS00485 (GYN04_00480) pilQ 102893..105088 (-) 2196 WP_003690569.1 type IV pilus secretin PilQ Machinery gene
  GYN04_RS00490 (GYN04_00485) pilP 105107..105652 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  GYN04_RS00495 (GYN04_00490) pilO 105670..106317 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  GYN04_RS00500 (GYN04_00495) pilN 106318..106917 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  GYN04_RS00505 (GYN04_00500) - 106920..108035 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  GYN04_RS00510 (GYN04_00505) - 108187..110583 (+) 2397 WP_003687357.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=420217 GYN04_RS00490 WP_003687351.1 105107..105652(-) (pilP) [Neisseria gonorrhoeae strain CT530]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=420217 GYN04_RS00490 WP_003687351.1 105107..105652(-) (pilP) [Neisseria gonorrhoeae strain CT530]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983

Multiple sequence alignment