Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GXN76_RS01630 Genome accession   NZ_CP048104
Coordinates   324313..325266 (+) Length   317 a.a.
NCBI ID   WP_173219760.1    Uniprot ID   A0A7D4BE48
Organism   Kroppenstedtia pulmonis strain W9323     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319313..330266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXN76_RS01605 (GXN76_01600) - 319872..320996 (+) 1125 WP_173219745.1 sensor histidine kinase -
  GXN76_RS01610 (GXN76_01605) - 320993..321610 (+) 618 WP_173219748.1 response regulator transcription factor -
  GXN76_RS01615 (GXN76_01610) - 321925..322368 (+) 444 WP_173219751.1 DUF441 domain-containing protein -
  GXN76_RS01620 (GXN76_01615) - 322686..323411 (+) 726 WP_173219754.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  GXN76_RS01625 (GXN76_01620) - 323563..324171 (-) 609 WP_173219757.1 DedA family protein -
  GXN76_RS01630 (GXN76_01625) ceuB 324313..325266 (+) 954 WP_173219760.1 ABC transporter permease Machinery gene
  GXN76_RS01635 (GXN76_01630) - 325256..326206 (+) 951 WP_173219763.1 iron chelate uptake ABC transporter family permease subunit -
  GXN76_RS01640 (GXN76_01635) - 326200..326958 (+) 759 WP_173219766.1 ABC transporter ATP-binding protein -
  GXN76_RS01645 (GXN76_01640) - 327168..328100 (+) 933 WP_173219769.1 siderophore ABC transporter substrate-binding protein -
  GXN76_RS01650 (GXN76_01645) cmr1 328469..329554 (+) 1086 WP_173219772.1 type III-B CRISPR module RAMP protein Cmr1 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34919.98 Da        Isoelectric Point: 9.5861

>NTDB_id=419796 GXN76_RS01630 WP_173219760.1 324313..325266(+) (ceuB) [Kroppenstedtia pulmonis strain W9323]
MKKRYLFIALIVFSFTSVFIGVEDLTLFDLFDLTDEKALILWGSRLPRLISIIIAGVSMSVCGLIMQQLTRNKFVSPTTA
GTMDAARLGILVSLLLFTSASSLQKILVAFAFALAGTFLFMKILDRIKFKDTIFIPLVGLMFGNIISSISTFFAYKYDVI
QNMSSWLHGDFAMIVSGRFELLYISIPLVIIAYLFADKFTIAGMGEEFAKNLGLNYKQVVNIGLVIVAMVTASVILTVGM
IPFLGLIIPNIVSIYQGDHLKKSLSHTALLGAVFVLFCDILGRIVIYPYEISISLTVGVIGSGIFIYLLMRGRAHAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=419796 GXN76_RS01630 WP_173219760.1 324313..325266(+) (ceuB) [Kroppenstedtia pulmonis strain W9323]
ATGAAAAAAAGATATTTGTTTATCGCACTTATTGTCTTTTCTTTTACATCGGTTTTCATAGGTGTCGAGGATCTAACGCT
GTTTGACCTTTTTGATCTGACAGATGAGAAGGCTCTTATATTATGGGGTAGCAGGCTTCCTCGTTTGATCAGTATCATCA
TTGCAGGGGTGAGTATGAGTGTATGCGGACTGATTATGCAACAGCTTACCCGTAACAAATTCGTGTCACCTACCACGGCC
GGGACGATGGATGCGGCCCGGTTGGGAATTCTCGTATCGCTGCTTCTCTTTACCTCGGCGAGTTCGTTGCAAAAGATACT
GGTTGCGTTTGCTTTTGCTTTGGCTGGTACGTTCCTGTTTATGAAGATTTTGGATCGAATCAAGTTTAAAGATACCATTT
TCATTCCCTTGGTCGGTCTGATGTTTGGCAATATTATCAGCTCCATCTCCACATTTTTTGCCTATAAATATGACGTCATT
CAGAACATGTCGTCCTGGTTGCACGGAGATTTTGCGATGATTGTTTCCGGGCGGTTTGAACTGCTGTATATCAGTATTCC
TCTGGTTATTATCGCGTACCTGTTTGCCGATAAGTTTACGATAGCGGGAATGGGTGAGGAGTTTGCGAAGAATCTGGGGC
TGAACTACAAGCAGGTGGTCAATATTGGACTTGTTATCGTCGCCATGGTTACCGCCTCCGTCATTCTTACAGTCGGGATG
ATTCCGTTTTTGGGGTTGATCATTCCCAATATCGTTTCGATCTATCAAGGGGATCATTTGAAAAAAAGCCTTTCTCATAC
AGCGCTTCTGGGGGCGGTCTTCGTCTTGTTTTGCGACATACTCGGACGGATCGTGATTTACCCGTATGAGATATCGATCA
GTCTGACCGTCGGAGTCATTGGAAGCGGGATATTTATTTACTTGTTGATGAGGGGAAGGGCCCATGCGTCTTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4BE48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.072

96.845

0.524

Multiple sequence alignment