Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GW535_RS15920 Genome accession   NZ_CP048066
Coordinates   3060607..3062112 (-) Length   501 a.a.
NCBI ID   WP_016209723.1    Uniprot ID   A0A9Q5VFW7
Organism   Piscirickettsia salmonis strain Ps-8079A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3055607..3067112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GW535_RS15905 (GW535_15875) - 3056322..3056735 (+) 414 WP_162034454.1 biotin/lipoyl-binding protein -
  GW535_RS15910 (GW535_15880) - 3056732..3057478 (+) 747 WP_162034455.1 efflux RND transporter periplasmic adaptor subunit -
  GW535_RS15915 (GW535_15885) - 3057498..3060605 (+) 3108 WP_016209727.1 efflux RND transporter permease subunit -
  GW535_RS15920 (GW535_15890) comM 3060607..3062112 (-) 1506 WP_016209723.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GW535_RS15925 (GW535_15895) ubiK 3062140..3062421 (-) 282 WP_016209714.1 ubiquinone biosynthesis accessory factor UbiK -
  GW535_RS15930 (GW535_15900) - 3062570..3062911 (+) 342 WP_016209709.1 P-II family nitrogen regulator -
  GW535_RS15935 (GW535_15905) speA 3063031..3064911 (+) 1881 WP_016209712.1 biosynthetic arginine decarboxylase -
  GW535_RS15940 (GW535_15910) - 3064996..3066594 (-) 1599 WP_059372650.1 hypothetical protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54520.47 Da        Isoelectric Point: 7.9377

>NTDB_id=419755 GW535_RS15920 WP_016209723.1 3060607..3062112(-) (comM) [Piscirickettsia salmonis strain Ps-8079A]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=419755 GW535_RS15920 WP_016209723.1 3060607..3062112(-) (comM) [Piscirickettsia salmonis strain Ps-8079A]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.493

100

0.535
  comM Haemophilus influenzae Rd KW20

53.28

100

0.535
  comM Glaesserella parasuis strain SC1401

53.082

100

0.533
  comM Vibrio campbellii strain DS40M4

53.094

100

0.531
  comM Legionella pneumophila str. Paris

51.21

99.002

0.507
  comM Legionella pneumophila strain ERS1305867

51.21

99.002

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.654

100

0.473

Multiple sequence alignment