Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CFU_RS21670 Genome accession   NC_015856
Coordinates   4870911..4872431 (+) Length   506 a.a.
NCBI ID   WP_014008139.1    Uniprot ID   G0AFH9
Organism   Collimonas fungivorans Ter331     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4865911..4877431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFU_RS21640 (CFU_4159) - 4866202..4866750 (-) 549 WP_238531359.1 GNAT family N-acetyltransferase -
  CFU_RS21645 (CFU_4160) amt 4866890..4868443 (-) 1554 WP_041742654.1 ammonium transporter -
  CFU_RS21650 (CFU_4161) - 4868457..4868795 (-) 339 WP_014008135.1 P-II family nitrogen regulator -
  CFU_RS21655 (CFU_4162) - 4868863..4869636 (-) 774 WP_014008136.1 TorF family putative porin -
  CFU_RS21660 (CFU_4163) - 4870083..4870547 (+) 465 WP_041742657.1 GNAT family N-acetyltransferase -
  CFU_RS21665 (CFU_4164) - 4870658..4870900 (+) 243 WP_041743774.1 accessory factor UbiK family protein -
  CFU_RS21670 (CFU_4165) comM 4870911..4872431 (+) 1521 WP_014008139.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CFU_RS21675 (CFU_4166) - 4872508..4872720 (+) 213 WP_014008140.1 DUF3460 family protein -
  CFU_RS21680 (CFU_4167) - 4872875..4873297 (+) 423 WP_041742659.1 carboxypeptidase-like regulatory domain-containing protein -
  CFU_RS21685 (CFU_4168) - 4873596..4873853 (+) 258 WP_014008142.1 DUF3567 domain-containing protein -
  CFU_RS21690 (CFU_4169) - 4873969..4874652 (+) 684 WP_041742660.1 SAM-dependent methyltransferase -
  CFU_RS21695 (CFU_4170) - 4874691..4876592 (-) 1902 WP_041742663.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54428.32 Da        Isoelectric Point: 8.3218

>NTDB_id=41952 CFU_RS21670 WP_014008139.1 4870911..4872431(+) (comM) [Collimonas fungivorans Ter331]
MTLAVLKSRALAGMQAPAVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASGQMPSDELDQYEFAGELSLSGELRPIRGALAMTFAMTAGCGERHAFILPRGNADEAALVGDARIFPA
DSLLQVCAHFSSRQPETRLLRHTALPSQQRRPPPYLDFSDVKGQMQAKRALEVAAAGSHSVLLVGPPGTGKSMLAARFPG
ILPPMSDREALESAAVQSLTSGFSGTRWKIRPYRAPHHTASGVALVGGGSPPRPGEISLAHRGVLFLDELPEFDRRVLEV
LREPLESGHITISRAARQADFPAQFQLIAAMNPCPCGYLGHAVKQCRCTPDQILRYQNKISGPLIDRIDMQIQVAAVPHD
QLLRQADGESSAAIAARVAQVHAAQLTRQGKQNNGLSASEIDCYCKPDDAGEKLLSGAMAHLHWSARAYHRVLKVARTIA
DLAAADTIGAAHVAEAIQYRRALQDA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=41952 CFU_RS21670 WP_014008139.1 4870911..4872431(+) (comM) [Collimonas fungivorans Ter331]
GTGACGCTGGCGGTGCTAAAAAGCCGGGCGCTGGCAGGCATGCAAGCGCCCGCAGTCACGGTTGAAGTCCACCTGGCCAA
CGGCTTGCCGTCTTTCACCATCGTCGGCCTGCCCGAAACCGAGGTCAAGGAATCCAAGGACCGGGTCCGCGCGGCGCTGC
AAAACGCCCGTTTCGAATTTCCCTCACGCCGCATCACCGTCAACCTGGCGCCCGCCGATTTGCCGAAGGAATCGGGCCGC
TTCGATTTGCCGATCGCGCTCGGCATCCTGGCCGCATCCGGGCAGATGCCGTCGGACGAACTCGATCAATACGAATTTGC
CGGAGAGCTGTCGCTGTCAGGCGAGTTAAGGCCGATACGCGGTGCATTGGCGATGACTTTCGCCATGACCGCCGGCTGCG
GTGAACGCCACGCTTTCATTCTGCCGCGCGGCAATGCCGACGAAGCGGCCCTGGTTGGCGATGCCCGCATTTTTCCGGCG
GACAGCCTGTTGCAGGTCTGCGCCCATTTTTCTTCCCGGCAGCCAGAAACCAGGTTGTTGCGCCACACGGCGTTGCCATC
GCAGCAGCGGCGGCCTCCTCCCTACCTCGATTTCAGCGACGTCAAAGGACAGATGCAAGCCAAGCGCGCACTGGAAGTCG
CCGCGGCGGGCAGTCATAGCGTACTGCTGGTCGGCCCTCCGGGTACCGGAAAATCCATGCTGGCGGCGCGTTTTCCCGGG
ATTCTGCCGCCCATGAGCGACCGCGAAGCGCTGGAATCGGCGGCGGTGCAGTCGCTCACCAGCGGTTTTTCGGGTACGCG
CTGGAAGATCAGGCCATACCGGGCGCCGCACCACACTGCCTCCGGCGTGGCGCTGGTGGGCGGCGGCAGCCCGCCGCGCC
CAGGTGAAATTTCCCTGGCCCATCGCGGCGTCCTGTTCCTCGATGAACTGCCGGAGTTCGACCGGCGTGTGCTGGAGGTA
TTGCGCGAGCCGCTCGAATCCGGCCACATCACGATTTCGCGGGCCGCGCGCCAGGCCGATTTTCCCGCCCAATTCCAGCT
GATCGCAGCGATGAATCCCTGCCCTTGTGGCTATCTTGGGCACGCGGTAAAACAATGCCGTTGCACGCCCGACCAGATCC
TGCGTTATCAAAACAAAATCTCCGGGCCGCTGATCGACCGCATCGACATGCAGATCCAGGTAGCCGCGGTGCCTCACGAC
CAGTTGCTGAGGCAGGCCGACGGCGAGTCCTCCGCCGCGATAGCGGCCAGGGTGGCGCAGGTGCATGCCGCGCAGCTGAC
GCGCCAGGGCAAGCAGAACAATGGCTTGTCGGCCAGCGAAATCGACTGTTACTGCAAGCCCGACGACGCCGGCGAAAAAT
TGCTGAGCGGCGCGATGGCGCATCTGCACTGGTCGGCGCGTGCCTATCACCGGGTGCTGAAAGTGGCGCGCACCATCGCC
GACCTGGCCGCGGCGGACACCATCGGCGCAGCCCATGTGGCAGAGGCAATCCAATACCGGCGGGCGTTGCAAGACGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-400)

Subunit ChlI of Mg-chelatase (ChlI)

(21-145)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0AFH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.98

99.209

0.545
  comM Vibrio campbellii strain DS40M4

53.785

99.209

0.534
  comM Legionella pneumophila strain ERS1305867

51.172

100

0.518
  comM Legionella pneumophila str. Paris

51.172

100

0.518
  comM Haemophilus influenzae Rd KW20

51.089

99.802

0.51
  comM Glaesserella parasuis strain SC1401

51.093

99.407

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

99.209

0.46

Multiple sequence alignment